#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V9R|1|AX (rep)P-site tRNA, mRNAEscherichia coliCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
24V9S|1|AXP-site tRNA, mRNAEscherichia coliCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
34V9R|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
44V9S|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
54V7M|1|AXtRNA-Met, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')Escherichia coliThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452014-07-09
64V67|1|AYP AND E-SITE TRNA(FMET), MRNAEscherichia coliCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
74V63|1|AYP and E-site tRNA(fMet), mRNAEscherichia coliStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212014-07-09
84V87|1|BCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12014-07-09
94V8F|1|CCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
104V9I|1|CVP-SITE tRNA, mRNAEscherichia coliCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
114V6A|1|CWtRNA-Met, RNA (5'-R(P*AP*AP*AP*UP*G)-3')Escherichia coliStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
124V63|1|CYP and E-site tRNA(fMet), mRNAEscherichia coliStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212014-07-09
134V67|1|CYP AND E-SITE TRNA(FMET), MRNAEscherichia coliCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
144V8C|1|DCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
154V8B|1|ACTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
164V63|1|AZP and E-site tRNA(fMet)Escherichia coliStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212014-07-09
174V67|1|AZP AND E-SITE TRNA(FMET)Escherichia coliCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
184V8E|1|BCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32014-07-09
194V8Q|1|BVE-SITE or P-SITE TRNA FMET, MRNAEscherichia coliComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
204V8B|1|CCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
214V6G|1|CCTRNA FMET (UNMODIFIED BASES), MRNAEscherichia coliInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
224V8C|1|CCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
234V63|1|CZP and E-site tRNA(fMet)Escherichia coliStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212014-07-09
244V67|1|CZP AND E-SITE TRNA(FMET)Escherichia coliCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
254V8E|1|DCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32014-07-09
264LT8|1|QVP-site tRNA fMet, messenger RNA, A-site ASL ProEscherichia coliCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.142014-08-06
274LT8|1|XVP-site tRNA fMet, messenger RNA, A-site ASL ProEscherichia coliCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.142014-08-06
284LNT|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Escherichia coliCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
294Y4P|1|1xP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.52015-03-18
304Z8C|1|2xInitiator Methionine tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.92015-05-20
314Y4P|1|2xP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.52015-03-18
323CW5|1|AInitiator tRNAEscherichia coliE. coli Initiator tRNAX-RAY DIFFRACTION3.12008-09-02
334W2G|1|AXE-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
344W2F|1|AXE-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
354W2H|1|AXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
364W2I|1|AXE-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
371VY5|1|AXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
381VY5|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
394W2F|1|CXE-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
404W2I|1|CXE-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
414W2G|1|CXE-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
424V5C|1|AVP-SITE TRNA FMET, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
431VY7|1|AXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
441VY6|1|AXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
451VY4|1|AXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
461VY6|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
474WPO|1|DXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
484V8D|1|ACTRNA-FMET, MRNAEscherichia coliStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
494V9I|1|AVP-SITE tRNA, mRNAEscherichia coliCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
504V6A|1|AWtRNA-Met, RNA (5'-R(P*AP*AP*AP*UP*G)-3')Escherichia coliStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
514V87|1|CCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12014-07-09
524V7M|1|CXRNA (77-MER), RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')Escherichia coliThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452014-07-09
534LNT|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Escherichia coliCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
544Z8C|1|1xInitiator Methionine tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.92015-05-20
554ZER|1|1xtRNA met, mRNAEscherichia coliCrystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3.12015-05-20
564ZER|1|2xtRNA met, mRNAEscherichia coliCrystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3.12015-05-20
573CW6|1|AInitiator tRNAEscherichia coliE. coli Initiator tRNAX-RAY DIFFRACTION3.32008-09-02
584WQY|1|BXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82015-01-28
594V8D|1|CCTRNA-FMET, MRNAEscherichia coliStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
601VVJ|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Escherichia coliCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.442014-08-06
614LSK|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Escherichia coliCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.482014-08-06
621VVJ|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Escherichia coliCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.442014-08-06
634LSK|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Escherichia coliCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.482014-08-06
644WPO|1|BXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
654V6G|1|CBTRNA FMET (UNMODIFIED BASES), MRNAEscherichia coliInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
664W2H|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
674WQY|1|DXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82015-01-28
684V51|1|AVP-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
694V51|1|CVP-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
704V6G|1|ACTRNA FMET (UNMODIFIED BASES), MRNAEscherichia coliInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
714V5K|1|AVE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
724V7L|1|AXtRNA-Met, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')Escherichia coliThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
731VY7|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
741VY4|1|CXP-site tRNA, mRNAEscherichia coliCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
752FMT|1|CFORMYL-METHIONYL-TRNAFMET2synthetic constructMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-RAY DIFFRACTION2.81999-07-29
762FMT|1|DFORMYL-METHIONYL-TRNAFMET2synthetic constructMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-RAY DIFFRACTION2.81999-07-29
774V5C|1|CVP-SITE TRNA FMET, MRNAEscherichia coliStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
785AFI|1|vP-site fMet-tRNAfMet, mRNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
794V8F|1|BCTRNA-FMET, MRNAEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
804V6G|1|CDTRNA FMET (UNMODIFIED BASES)Escherichia coliInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
814V5K|1|CVE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
824V6G|1|ADTRNA FMET (UNMODIFIED BASES)Escherichia coliInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
834V7L|1|CXtRNA-Met, RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')Escherichia coliThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
844V8Q|1|BWE-SITE or P-SITE TRNA FMETEscherichia coliComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
854V8C|1|CDTRNA-FMETEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
864V8B|1|ADTRNA-FMETEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
874V87|1|CDTRNA-FMETEscherichia coliCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12014-07-09
884V8C|1|DDTRNA-FMETEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
894V87|1|BDTRNA-FMETEscherichia coliCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12014-07-09
904V8B|1|CDTRNA-FMETEscherichia coliCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
915AFI|1|wP-site fMet-tRNAfMetEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
923QSY|1|DtRNAEscherichia coliRecognition of the methionylated initiator tRNA by the translation initiation factor 2 in ArchaeaX-RAY DIFFRACTION3.22012-03-21
934V5K|1|AWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
944V5K|1|CWE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09

Release history

Release2.242.25
Date2015-05-222015-05-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_35542.7NR_all_35542.62.24(90) 1VY5|1|CX, 1VY6|1|AX, 1VY5|1|AX, 1VY6|1|CX, 1VY7|1|AX, 1VVJ|1|XV, 1VY4|1|AX, 1VVJ|1|QV, 1VY4|1|CX, 5AFI|1|v, 4Y4P|1|2x, 5AFI|1|w, 4WQY|1|DX, 4WQY|1|BX, 4Y4P|1|1x, 4W2I|1|CX, 4WPO|1|BX, 4W2I|1|AX, 4WPO|1|DX, 4W2G|1|CX, 4W2H|1|AX, 4W2G|1|AX, 4W2H|1|CX, 4V9S|1|CX, 4V9S|1|AX, 4W2F|1|AX, 4V9R|1|CX, 4W2F|1|CX, 4V9I|1|CV, 4V9I|1|AV, 4V8Q|1|BW, 4V9R|1|AX, 4V8F|1|BC, 4V8F|1|CC, 4V8E|1|DC, 4V8Q|1|BV, 4V8D|1|AC, 4V8D|1|CC, 4V8C|1|DD, 4V8E|1|BC, 4V8C|1|CC, 4V8C|1|CD, 4V8B|1|CD, 4V8C|1|DC, 4V8B|1|AC, 4V87|1|CD, 4V87|1|CC, 4V8B|1|CC, 4V8B|1|AD, 4V7M|1|CX, 4V87|1|BC, 4V7M|1|AX, 4V87|1|BD, 4V6G|1|CD, 4V7L|1|AX, 4V6G|1|CC, 4V7L|1|CX, 4V6G|1|AC, 4V6G|1|AD, 4V6A|1|CW, 4V6G|1|CB, 4V67|1|CY, 4V67|1|AZ, 4V67|1|AY, 4V6A|1|AW, 4V67|1|CZ, 4V63|1|AZ, 4V63|1|CY, 4V63|1|AY, 4V63|1|CZ, 4V5K|1|AW, 4V5K|1|CV, 4V5K|1|AV, 4V5K|1|CW, 4V51|1|CV, 4V5C|1|AV, 4V51|1|AV, 4V5C|1|CV, 4LSK|1|XV, 4LSK|1|QV, 4LT8|1|QV, 4LNT|1|XV, 4LT8|1|XV, 3QSY|1|D, 3CW6|1|A, 3CW5|1|A, 4LNT|1|QV, 1VY7|1|CX, 2FMT|1|C, 2FMT|1|D(4) 4ZER|1|1x, 4ZER|1|2x, 4Z8C|1|2x, 4Z8C|1|1x(61) 4P6F|1|QV, 4V5F|1|CW, 4V69|1|AV, 4V6N|1|BD, 4V6O|1|AD, 4V6P|1|AD, 4V6Q|1|AD, 4V6R|1|AD, 4V6S|1|BC, 4V6T|1|AX, 4V6V|1|A3, 4V6Y|1|A3, 4V6Z|1|A3, 4V70|1|A3, 4V71|1|A3, 4V5F|1|CV, 4V5F|1|AW, 4P6F|1|XV, 4P70|1|QV, 4P70|1|XV, 4TUA|1|QV, 4TUA|1|XV, 4TUB|1|QV, 4TUB|1|XV, 4TUC|1|QV, 4TUC|1|XV, 4TUD|1|QV, 4TUD|1|XV, 4V4X|1|AC, 4V4Z|1|AC, 4V5F|1|AV, 4V72|1|A3, 4V73|1|A3, 3J5S|1|E, 3J77|1|PT, 3J78|1|ET, 3J78|1|PT, 3J9Y|1|v, 3V11|1|D, 4L71|1|QV, 4L71|1|XV, 4LEL|1|QV, 4LEL|1|XV, 4LFZ|1|QV, 4LFZ|1|XV, 3DEG|1|B, 1EG0|1|O, 4V74|1|A3, 4V75|1|A3, 4V76|1|A3, 4V77|1|A3, 4V78|1|A3, 4V79|1|A3, 4V7B|1|AV, 4V7P|1|AW, 4V7P|1|DW, 4V8J|1|AV, 4V8J|1|CV, 4V8O|1|AV, 4V97|1|AV, 4V97|1|CV

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V5C|1|CVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
24V8E|1|DCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.377
34V8E|1|BCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.377
44V8D|1|CCStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION377
54V8F|1|CCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.377
64V8D|1|ACStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION377
74V8F|1|BCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.377
85AFI|1|v2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.973
94ZER|1|1xCrystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3.172
104V6G|1|CCInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
114V8C|1|CCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
124V87|1|BCCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
134V8B|1|ACCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
144V8B|1|CCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
154V87|1|CCCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
164V8C|1|DCCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
174Z8C|1|2xCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.972
184Z8C|1|1xCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.972
194W2I|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.772
201VY7|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.871
211VY6|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.971
224W2G|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5572
231VY5|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5572
241VY4|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.671
254WPO|1|BXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.871
264WQY|1|BXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.872
274V9S|1|AXCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.176
284V9R|1|AXCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION376
294W2H|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.772
304W2F|1|AXCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.472
314Y4P|1|1xCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.572
324V5K|1|AVStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
334ZER|1|2xCrystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3.172
344V6G|1|ACInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
354V8Q|1|BVComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.177
364V63|1|CYStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
374V63|1|AYStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
384V67|1|AYCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
394V67|1|CYCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
404V6A|1|CWStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.177
414V6A|1|AWStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.177
424W2I|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.772
434W2H|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.772
444V9R|1|CXCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION376
454V9S|1|CXCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.176
464WQY|1|DXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.872
474WPO|1|DXCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.871
481VY4|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.671
491VY5|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5572
501VY6|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.971
514W2G|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5572
524W2F|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.472
534Y4P|1|2xCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.572
544LNT|1|QVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.9477
554LT8|1|XVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.1477
561VVJ|1|XVCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.4477
574LSK|1|XVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.4877
584LSK|1|QVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.4877
591VVJ|1|QVCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.4477
604LT8|1|QVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.1477
614V7M|1|AXThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.4577
624LNT|1|XVCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.9477
634V5C|1|AVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
644V9I|1|CVCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.377
654V51|1|AVStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
664V51|1|CVStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
674V9I|1|AVCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.377
684V7L|1|AXThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION377
694V7M|1|CXThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.4577
704V7L|1|CXThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION377
711VY7|1|CXCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.871
724V5K|1|CVStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
735AFI|1|w2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.973
744V5K|1|CWStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
754V5K|1|AWStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.277
764V8Q|1|BWComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.177
774V63|1|CZStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
784V63|1|AZStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.2177
794V67|1|AZCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
804V67|1|CZCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION377
814V6G|1|CDInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
824V87|1|BDCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
834V8B|1|ADCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
844V8C|1|CDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
854V8C|1|DDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.377
864V8B|1|CDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION377
874V87|1|CDCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.177
884V6G|1|ADInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.577
894V6G|1|CBInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.565
903CW5|1|AE. coli Initiator tRNAX-RAY DIFFRACTION3.172
913CW6|1|AE. coli Initiator tRNAX-RAY DIFFRACTION3.372
922FMT|1|DMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-RAY DIFFRACTION2.872
932FMT|1|CMETHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMETX-RAY DIFFRACTION2.872
943QSY|1|DRecognition of the methionylated initiator tRNA by the translation initiation factor 2 in ArchaeaX-RAY DIFFRACTION3.277