Equivalence class NR_3.5_43481.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7UW1|1|a (rep) | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii 70S ribosome-Streptothricin-D complex | Electron microscopy | 2.21 | 2023-04-19 |
| 2 | 7UVZ|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA | Electron microscopy | 2.21 | 2023-04-19 |
| 3 | 7UVX|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii 70S ribosome-Streptothricin-F complex | Electron microscopy | 2.35 | 2023-04-19 |
| 4 | 7UVW|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome: 70S with E-site tRNA | Electron microscopy | 2.37 | 2023-04-19 |
| 5 | 7RYG|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S | Electron microscopy | 2.38 | 2022-02-02 |
| 6 | 7UVY|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA | Electron microscopy | 2.39 | 2023-04-19 |
| 7 | 7RYH|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-TP-6076 complex: Empty 70S | Electron microscopy | 2.43 | 2022-02-02 |
| 8 | 7UVV|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA | Electron microscopy | 2.5 | 2023-04-19 |
| 9 | 7M4Y|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | Electron microscopy | 2.5 | 2021-05-19 |
| 10 | 7M4W|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S Empty | Electron microscopy | 2.55 | 2021-05-19 |
| 11 | 7RYF|1|a | Small subunit ribosomal RNA | 16S Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S | Electron microscopy | 2.65 | 2022-02-02 |
| 12 | 7M4X|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | Electron microscopy | 2.66 | 2021-05-19 |
| 13 | 7M4U|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 30S | Electron microscopy | 2.71 | 2021-05-19 |
| 14 | 6V3A|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | Electron microscopy | 2.82 | 2020-02-05 |
| 15 | 6V3B|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | Electron microscopy | 2.91 | 2020-02-05 |
| 16 | 7M4Z|1|a | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00177 | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | Electron microscopy | 2.92 | 2021-05-19 |
| 17 | 6V39|1|sN1 | Small subunit ribosomal RNA | 16s Ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | Electron microscopy | 3.04 | 2020-02-05 |
| 18 | 6YT9|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | Electron microscopy | 2.7 | 2020-09-16 |
| 19 | 6YPU|1|2 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | Electron microscopy | 2.9 | 2020-09-16 |
| 20 | 6YS5|1|3 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
| 21 | 6YTF|1|3 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | Electron microscopy | 3 | 2020-09-16 |
| 22 | 6YT9|1|4 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | Electron microscopy | 2.7 | 2020-09-16 |
| 23 | 6YPU|1|4 | Small subunit ribosomal RNA | 16S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00177 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | Electron microscopy | 2.9 | 2020-09-16 |
Release history
| Release | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_43481.4 | NR_3.5_43481.3 | 3.279 | (17) 6YT9|1|2, 7M4Y|1|a, 6V3A|1|sN1, 7M4X|1|a, 6V39|1|sN1, 7RYH|1|a, 6YS5|1|3, 7M4W|1|a, 7RYG|1|a, 6YPU|1|4, 7M4U|1|a, 7RYF|1|a, 6YPU|1|2, 6YTF|1|3, 7M4Z|1|a, 6V3B|1|sN1, 6YT9|1|4 | (6) 7UVZ|1|a, 7UVV|1|a, 7UVX|1|a, 7UVY|1|a, 7UW1|1|a, 7UVW|1|a | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6YTF|1|3 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 453 |
| 2 | 6YS5|1|3 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head | ELECTRON MICROSCOPY | 3 | 453 |
| 3 | 6V3A|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.82 | 1519 |
| 4 | 6V3B|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | ELECTRON MICROSCOPY | 2.91 | 1519 |
| 5 | 6YPU|1|2 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | ELECTRON MICROSCOPY | 2.9 | 894 |
| 6 | 7M4Y|1|a | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | ELECTRON MICROSCOPY | 2.5 | 1519 |
| 7 | 7UVZ|1|a | A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.21 | 1519 |
| 8 | 7UVW|1|a | A. baumannii ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.37 | 1519 |
| 9 | 7RYG|1|a | A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S | ELECTRON MICROSCOPY | 2.38 | 1519 |
| 10 | 7RYH|1|a | A. baumannii Ribosome-TP-6076 complex: Empty 70S | ELECTRON MICROSCOPY | 2.43 | 1519 |
| 11 | 7UVX|1|a | A. baumannii 70S ribosome-Streptothricin-F complex | ELECTRON MICROSCOPY | 2.35 | 1519 |
| 12 | 7M4W|1|a | A. baumannii Ribosome-Eravacycline complex: 70S Empty | ELECTRON MICROSCOPY | 2.55 | 1519 |
| 13 | 7M4U|1|a | A. baumannii Ribosome-Eravacycline complex: 30S | ELECTRON MICROSCOPY | 2.71 | 1519 |
| 14 | 6YT9|1|2 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | ELECTRON MICROSCOPY | 2.7 | 894 |
| 15 | 7UW1|1|a | A. baumannii 70S ribosome-Streptothricin-D complex | ELECTRON MICROSCOPY | 2.21 | 1519 |
| 16 | 7UVY|1|a | A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA | ELECTRON MICROSCOPY | 2.39 | 1519 |
| 17 | 7UVV|1|a | A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA | ELECTRON MICROSCOPY | 2.5 | 1519 |
| 18 | 7M4Z|1|a | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | ELECTRON MICROSCOPY | 2.92 | 1519 |
| 19 | 7M4X|1|a | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | ELECTRON MICROSCOPY | 2.66 | 1519 |
| 20 | 7RYF|1|a | A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S | ELECTRON MICROSCOPY | 2.65 | 1519 |
| 21 | 6V39|1|sN1 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | ELECTRON MICROSCOPY | 3.04 | 1519 |
| 22 | 6YT9|1|4 | Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body | ELECTRON MICROSCOPY | 2.7 | 146 |
| 23 | 6YPU|1|4 | Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body | ELECTRON MICROSCOPY | 2.9 | 146 |