Equivalence class NR_3.5_45043.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WRT|1|V+ 4WRT|1|R (rep) | Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' end | Influenza B virus | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-ray diffraction | 2.7 | 2014-11-19 | |||
| 2 | 6QCW|1|V+ 6QCW|1|R+ 6QCW|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-ray diffraction | 2.88 | 2019-06-05 | |||
| 3 | 6QCX|1|V+ 6QCX|1|R+ 6QCX|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-ray diffraction | 3.08 | 2019-06-05 | |||
| 4 | 7Z43|1|VVV+ 7Z43|1|RRR | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3') | Influenza B virus | Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B | X-ray diffraction | 3.123 | 2022-05-11 | |||
| 5 | 6QCV|1|V+ 6QCV|1|R+ 6QCV|1|M | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-ray diffraction | 3.24 | 2019-06-05 | |||
| 6 | 4WSA|1|V+ 4WSA|1|R | Influenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' end | Influenza B virus | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-ray diffraction | 3.4 | 2014-11-19 | |||
| 7 | 5M3J|1|V+ 5M3J|1|R | RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3') | Influenza B virus | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-ray diffraction | 3.5 | 2016-12-21 | |||
| 8 | 6T0N|1|V+ 6T0N|1|R | 5' vRNA, 3' vRNA | Influenza B virus | Bat Influenza A polymerase pre-initiation complex | Electron microscopy | 2.54 | 2020-04-15 | |||
| 9 | 6QCS|1|V+ 6QCS|1|R | 5 end, 3 end | Influenza B virus | Influenza B polymerase pre-initiation complex | Electron microscopy | 3.1 | 2019-06-05 |
Release history
| Release | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_45043.4 | NR_3.5_45043.3 | 3.230 | (8) 6T0N|1|V+6T0N|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCS|1|V+6QCS|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R | (1) 7Z43|1|VVV+7Z43|1|RRR | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_45043.4 | NR_3.5_14145.1 | 3.263 | (9) 6QCS|1|V+6QCS|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6T0N|1|V+6T0N|1|R, 4WRT|1|V+4WRT|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 7Z43|1|VVV+7Z43|1|RRR, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M | (0) | (9) 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|U, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6SZV|1|V, 7ZPL|1|V, 7R1F|1|V, 6T0V|1|V, 6QCT|1|V |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6QCV|1|V+6QCV|1|R+6QCV|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-RAY DIFFRACTION | 3.24 | 14 |
| 2 | 6QCX|1|V+6QCX|1|R+6QCX|1|M | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-RAY DIFFRACTION | 3.08 | 14 |
| 3 | 6QCW|1|V+6QCW|1|R+6QCW|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-RAY DIFFRACTION | 2.88 | 14 |
| 4 | 7Z43|1|VVV+7Z43|1|RRR | Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B | X-RAY DIFFRACTION | 3.123 | 14 |
| 5 | 5M3J|1|V+5M3J|1|R | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-RAY DIFFRACTION | 3.5 | 14 |
| 6 | 4WSA|1|V+4WSA|1|R | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-RAY DIFFRACTION | 3.4 | 14 |
| 7 | 6QCS|1|V+6QCS|1|R | Influenza B polymerase pre-initiation complex | ELECTRON MICROSCOPY | 3.1 | 14 |
| 8 | 4WRT|1|V+4WRT|1|R | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-RAY DIFFRACTION | 2.7 | 14 |
| 9 | 6T0N|1|V+6T0N|1|R | Bat Influenza A polymerase pre-initiation complex | ELECTRON MICROSCOPY | 2.54 | 14 |