Equivalence class NR_3.5_45930.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CAP|1|W+ 6CAP|1|Y (rep) | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-ray diffraction | 3.4 | 2018-07-25 | |||
| 2 | 6CAQ|1|W+ 6CAQ|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.4 | 2018-07-25 | |||
| 3 | 1IBL|1|Y+ 1IBL|1|Z | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-ray diffraction | 3.11 | 2001-05-04 | ||||
| 4 | 6CAO|1|W+ 6CAO|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Structure of the ribosomal decoding complex at ambient temperature | X-ray diffraction | 3.45 | 2018-07-25 | |||
| 5 | 1IBM|1|Y+ 1IBM|1|Z | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-ray diffraction | 3.31 | 2001-05-04 | ||||
| 6 | 6CAS|1|W+ 6CAS|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-ray diffraction | 3.5 | 2018-07-25 | |||
| 7 | 4DR5|1|W+ 4DR5|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-ray diffraction | 3.45 | 2012-11-14 | |||
| 8 | 6CAR|1|W+ 6CAR|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-ray diffraction | 3.4 | 2018-07-25 | |||
| 9 | 4AQY|1|Z+ 4AQY|1|W | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*CP*AP*AP*AP)-3' | Thermus thermophilus | Structure of ribosome-apramycin complexes | X-ray diffraction | 3.5 | 2012-07-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_45930.2 | NR_3.5_45930.1 | 3.213 | (9) 1IBL|1|Y+1IBL|1|Z, 1IBM|1|Y+1IBM|1|Z, 4AQY|1|Z+4AQY|1|W, 4DR5|1|W+4DR5|1|V, 6CAO|1|W+6CAO|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAS|1|W+6CAS|1|Y | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_45930.2 | NR_3.5_45930.3 | 3.215 | (9) 1IBL|1|Y+1IBL|1|Z, 1IBM|1|Y+1IBM|1|Z, 4AQY|1|Z+4AQY|1|W, 4DR5|1|W+4DR5|1|V, 6CAO|1|W+6CAO|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAS|1|W+6CAS|1|Y | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1IBL|1|Y+1IBL|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 15 |
| 2 | 4DR5|1|W+4DR5|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-RAY DIFFRACTION | 3.45 | 15 |
| 3 | 6CAS|1|W+6CAS|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-RAY DIFFRACTION | 3.5 | 15 |
| 4 | 6CAQ|1|W+6CAQ|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.4 | 15 |
| 5 | 6CAP|1|W+6CAP|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 |
| 6 | 6CAR|1|W+6CAR|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 |
| 7 | 6CAO|1|W+6CAO|1|Y | Structure of the ribosomal decoding complex at ambient temperature | X-RAY DIFFRACTION | 3.45 | 15 |
| 8 | 1IBM|1|Y+1IBM|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 11 |
| 9 | 4AQY|1|Z+4AQY|1|W | Structure of ribosome-apramycin complexes | X-RAY DIFFRACTION | 3.5 | 15 |