RNA 3D Hub //

Equivalence class NR_3.5_46995.10 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16ZOJ|1|2 (rep)Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, composite mapElectron microscopy2.817042020-07-22
26QZP|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.917402019-04-24
36EK0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.917062018-01-24
46Y2L|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in POST stateElectron microscopy317132020-04-15
56OM0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.117142019-06-19
66OLE|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.117142019-06-19
76Y0G|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in classical-PRE stateElectron microscopy3.216972020-04-15
86OLG|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.417082019-06-19
96OLI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.517142019-06-19
106Y57|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in hybrid-PRE stateElectron microscopy3.516582020-04-15
116G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RElectron microscopy3.516572018-06-06
125AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.517082015-05-20
136ZOL|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on headElectron microscopy2.84722020-07-22

Release history

Release3.136
Date2020-07-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_46995.10NR_3.5_46995.93.136(11) 5AJ0|1|B1, 6EK0|1|S2, 6G5I|1|2, 6OLE|1|S2, 6OLG|1|B1, 6OLI|1|S2, 6OM0|1|S2, 6QZP|1|S2, 6Y0G|1|S2, 6Y2L|1|S2, 6Y57|1|S2(2) 6ZOJ|1|2, 6ZOL|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_46995.10NR_3.5_46995.113.137(13) 5AJ0|1|B1, 6EK0|1|S2, 6G5I|1|2, 6OLE|1|S2, 6OLG|1|B1, 6OLI|1|S2, 6OM0|1|S2, 6QZP|1|S2, 6Y0G|1|S2, 6Y2L|1|S2, 6Y57|1|S2, 6ZOJ|1|2, 6ZOL|1|2(0) (9) 6Z6L|1|S2, 6Z6M|1|S2, 6Z6N|1|S2, 6ZLW|1|2, 6ZM7|1|S2, 6ZN5|1|2, 6ZOK|1|2, 6ZON|1|2, 6ZP4|1|2

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
26ZOL|1|2SARS-CoV-2-Nsp1-40S complex, focused on headELECTRON MICROSCOPY2.8472
36ZOJ|1|2SARS-CoV-2-Nsp1-40S complex, composite mapELECTRON MICROSCOPY2.81704
45AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
56OLG|1|B1Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.41708
66EK0|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
76QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91740
86Y2L|1|S2Structure of human ribosome in POST stateELECTRON MICROSCOPY31713
96Y57|1|S2Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.51658
106Y0G|1|S2Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.21697
116OLE|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11714
126OLI|1|S2Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.51714
136OM0|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11714

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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