NR_3.5_46995.20

Members (35)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	6ZMI\|1\|S2 (rep)	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	Electron microscopy	2.6	2020-08-19
2	6ZM7\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	Electron microscopy	2.7	2020-07-29
3	6ZLW\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit	Electron microscopy	2.6	2020-07-29
4	6ZVH\|1\|2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	EDF1-ribosome complex	Electron microscopy	2.9	2020-08-19
5	6Z6N\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	Electron microscopy	2.9	2020-07-29
6	6ZOJ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, composite map	Electron microscopy	2.8	2020-07-22
7	6ZP4\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	Electron microscopy	2.9	2020-07-29
8	6ZXG\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1	Electron microscopy	2.6	2020-12-02
9	6QZP\|1\|S2	Small subunit ribosomal RNA	18S rRNA (1740-MER)	Homo sapiens	Eukarya	RF01960	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2019-04-24
10	6ZME\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	Electron microscopy	3	2020-08-12
11	6Z6L\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	Electron microscopy	3	2020-07-29
12	6EK0\|1\|S2		18S ribosomal RNA	Homo sapiens	Eukarya		High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2018-01-24
13	6ZON\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	Electron microscopy	3	2020-07-29
14	6ZXH\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2	Electron microscopy	2.7	2020-12-16
15	7K5I\|1\|2	Small subunit ribosomal RNA	40S ribosomal rRNA18S	Homo sapiens	Eukarya	RF01960	SARS-COV-2 nsp1 in complex with human 40S ribosome	Electron microscopy	2.9	2020-10-14
16	6ZMO\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	Electron microscopy	3.1	2020-08-19
17	6Z6M\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	Electron microscopy	3.1	2020-07-29
18	6ZXE\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2	Electron microscopy	3	2020-12-02
19	6Y2L\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in POST state	Electron microscopy	3	2020-04-15
20	6XA1\|1\|S2	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a drug-like compound stalled human translation termination complex	Electron microscopy	2.8	2020-10-07
21	6OM0\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
22	6OLE\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
23	6ZN5\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2	Electron microscopy	3.2	2020-07-29
24	6ZXD\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1	Electron microscopy	3.2	2020-12-02
25	6Y0G\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in classical-PRE state	Electron microscopy	3.2	2020-04-15
26	6ZMT\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex	Electron microscopy	3	2020-08-19
27	7A09\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of a human ABCE1-bound 43S pre-initiation complex - State III	Electron microscopy	3.5	2020-10-14
28	6OLG\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	Electron microscopy	3.4	2019-06-19
29	6OLI\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	Electron microscopy	3.5	2019-06-19
30	6Y57\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in hybrid-PRE state	Electron microscopy	3.5	2020-04-15
31	6G5I\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	Electron microscopy	3.5	2018-06-06
32	6ZOK\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, focused on body	Electron microscopy	2.8	2020-07-29
33	5AJ0\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo electron microscopy of actively translating human polysomes (POST state).	Electron microscopy	3.5	2015-05-20
34	6YBW\|1\|A	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	Structure of a human 48S translational initiation complex - 40S body	Electron microscopy	3.1	2020-09-16
35	6ZOL\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	SARS-CoV-2-Nsp1-40S complex, focused on head	Electron microscopy	2.8	2020-07-22

Release history

Release	3.157	3.158	3.159	3.160	3.161	3.162	3.163	3.164	3.165	3.166	3.167	3.168	3.169	3.170	3.171	3.172	3.173	3.174	3.175	3.176	3.177
Date	2020-12-16	2020-12-23	2020-12-30	2021-01-06	2021-01-13	2021-01-20	2021-01-27	2021-02-03	2021-02-10	2021-02-17	2021-02-24	2021-03-03	2021-03-10	2021-03-17	2021-03-24	2021-03-31	2021-04-07	2021-04-14	2021-04-21	2021-04-28	2021-05-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_46995.20	NR_3.5_46995.19	3.157	(34) 6ZLW\|1\|2, 6Z6N\|1\|S2, 6Z6M\|1\|S2, 6Z6L\|1\|S2, 6YBW\|1\|A, 6Y57\|1\|S2, 6Y2L\|1\|S2, 6Y0G\|1\|S2, 6XA1\|1\|S2, 6QZP\|1\|S2, 6OM0\|1\|S2, 6OLI\|1\|S2, 6OLG\|1\|B1, 6OLE\|1\|S2, 6G5I\|1\|2, 7K5I\|1\|2, 6EK0\|1\|S2, 7A09\|1\|2, 5AJ0\|1\|B1, 6ZXG\|1\|2, 6ZXE\|1\|2, 6ZXD\|1\|2, 6ZVH\|1\|2, 6ZP4\|1\|2, 6ZON\|1\|2, 6ZOL\|1\|2, 6ZOK\|1\|2, 6ZOJ\|1\|2, 6ZN5\|1\|2, 6ZMT\|1\|2, 6ZMO\|1\|S2, 6ZMI\|1\|S2, 6ZME\|1\|S2, 6ZM7\|1\|S2	(1) 6ZXH\|1\|2	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_46995.20	NR_3.5_46995.21	3.178	(35) 6ZXD\|1\|2, 6OLI\|1\|S2, 6Z6L\|1\|S2, 6ZMT\|1\|2, 6ZVH\|1\|2, 6OLG\|1\|B1, 6YBW\|1\|A, 6ZMO\|1\|S2, 6ZP4\|1\|2, 6OLE\|1\|S2, 6Y57\|1\|S2, 6ZMI\|1\|S2, 6ZON\|1\|2, 7K5I\|1\|2, 6G5I\|1\|2, 6Y2L\|1\|S2, 6ZME\|1\|S2, 6ZOL\|1\|2, 7A09\|1\|2, 6EK0\|1\|S2, 6Y0G\|1\|S2, 6ZM7\|1\|S2, 6ZXH\|1\|2, 5AJ0\|1\|B1, 6XA1\|1\|S2, 6ZLW\|1\|2, 6ZOK\|1\|2, 6ZXG\|1\|2, 6QZP\|1\|S2, 6Z6N\|1\|S2, 6ZOJ\|1\|2, 6ZXE\|1\|2, 6OM0\|1\|S2, 6Z6M\|1\|S2, 6ZN5\|1\|2	(0)	(2) 6ZV6\|1\|2, 6ZUO\|1\|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	6OM0\|1\|S2	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
2	5AJ0\|1\|B1	Cryo electron microscopy of actively translating human polysomes (POST state).	ELECTRON MICROSCOPY	3.5	1708
3	6OLG\|1\|B1	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	ELECTRON MICROSCOPY	3.4	1708
4	6Y0G\|1\|S2	Structure of human ribosome in classical-PRE state	ELECTRON MICROSCOPY	3.2	1697
5	6Y57\|1\|S2	Structure of human ribosome in hybrid-PRE state	ELECTRON MICROSCOPY	3.5	1658
6	6OLE\|1\|S2	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
7	6OLI\|1\|S2	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	ELECTRON MICROSCOPY	3.5	1680
8	6Y2L\|1\|S2	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	1713
9	6XA1\|1\|S2	Structure of a drug-like compound stalled human translation termination complex	ELECTRON MICROSCOPY	2.8	1512
10	6ZVH\|1\|2	EDF1-ribosome complex	ELECTRON MICROSCOPY	2.9	1740
11	6QZP\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1707
12	6EK0\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1706
13	6Z6N\|1\|S2	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)	ELECTRON MICROSCOPY	2.9	1740
14	6Z6L\|1\|S2	Cryo-EM structure of human CCDC124 bound to 80S ribosomes	ELECTRON MICROSCOPY	3	1740
15	6ZMO\|1\|S2	SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex	ELECTRON MICROSCOPY	3.1	1740
16	6ZMI\|1\|S2	SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex	ELECTRON MICROSCOPY	2.6	1740
17	6ZM7\|1\|S2	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex	ELECTRON MICROSCOPY	2.7	1740
18	6ZME\|1\|S2	SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex	ELECTRON MICROSCOPY	3	1740
19	6ZN5\|1\|2	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2	ELECTRON MICROSCOPY	3.2	1671
20	6ZXG\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1	ELECTRON MICROSCOPY	2.6	1577
21	6ZXH\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2	ELECTRON MICROSCOPY	2.7	1577
22	6ZOK\|1\|2	SARS-CoV-2-Nsp1-40S complex, focused on body	ELECTRON MICROSCOPY	2.8	1232
23	6ZOJ\|1\|2	SARS-CoV-2-Nsp1-40S complex, composite map	ELECTRON MICROSCOPY	2.8	1704
24	6ZOL\|1\|2	SARS-CoV-2-Nsp1-40S complex, focused on head	ELECTRON MICROSCOPY	2.8	472
25	7K5I\|1\|2	SARS-COV-2 nsp1 in complex with human 40S ribosome	ELECTRON MICROSCOPY	2.9	1665
26	6ZLW\|1\|2	SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit	ELECTRON MICROSCOPY	2.6	1665
27	6ZON\|1\|2	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1	ELECTRON MICROSCOPY	3	1721
28	6Z6M\|1\|S2	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1	ELECTRON MICROSCOPY	3.1	1740
29	6YBW\|1\|A	Structure of a human 48S translational initiation complex - 40S body	ELECTRON MICROSCOPY	3.1	1196
30	6ZP4\|1\|2	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2	ELECTRON MICROSCOPY	2.9	1721
31	7A09\|1\|2	Structure of a human ABCE1-bound 43S pre-initiation complex - State III	ELECTRON MICROSCOPY	3.5	1721
32	6ZMT\|1\|2	SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex	ELECTRON MICROSCOPY	3	1569
33	6ZXD\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1	ELECTRON MICROSCOPY	3.2	1645
34	6ZXE\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2	ELECTRON MICROSCOPY	3	1645
35	6G5I\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	ELECTRON MICROSCOPY	3.5	1657

Equivalence class NR_3.5_46995.20 Obsolete

Release history

Parents

Children