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Equivalence class NR_3.5_52752.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16ZM7|1|L7 (rep)5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.72020-07-29
26Y6X|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Tetracenomycin X bound to the human ribosomeElectron microscopy2.82020-07-08
36Z6N|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.92020-07-29
46QZP|1|L75S ribosomal RNA5S rRNA (120-MER)Homo sapiensEukaryaRF00001High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
56EK0|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92018-01-24
66Z6L|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy32020-07-29
76Z6M|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1Electron microscopy3.12020-07-29
86OLE|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
96Y2L|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome in POST stateElectron microscopy32020-04-15
106OM0|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
116Y0G|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Structure of human ribosome in classical-PRE stateElectron microscopy3.22020-04-15
126OLG|1|A45S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.42019-06-19
136OLI|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.52019-06-19
146Y57|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
155AJ0|1|A45S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.52015-05-20

Release history

Release3.1373.138
Date2020-07-292020-08-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_52752.4NR_3.5_52752.33.137(11) 6EK0|1|L7, 6Y57|1|L7, 5AJ0|1|A4, 6Y2L|1|L7, 6Y0G|1|L7, 6QZP|1|L7, 6OM0|1|E, 6OLI|1|E, 6OLG|1|A4, 6OLE|1|E, 6Y6X|1|L7(4) 6Z6N|1|L7, 6Z6M|1|L7, 6Z6L|1|L7, 6ZM7|1|L7(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_52752.4NR_3.5_52752.53.139(15) 6QZP|1|L7, 6OM0|1|E, 6OLI|1|E, 6OLG|1|A4, 6OLE|1|E, 6EK0|1|L7, 5AJ0|1|A4, 6ZM7|1|L7, 6Z6N|1|L7, 6Z6M|1|L7, 6Z6L|1|L7, 6Y6X|1|L7, 6Y57|1|L7, 6Y2L|1|L7, 6Y0G|1|L7(0) (1) 6ZME|1|L7

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16Y57|1|L7Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.5120
26Y2L|1|L7Structure of human ribosome in POST stateELECTRON MICROSCOPY3120
36Y0G|1|L7Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.2120
46EK0|1|L7High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.9120
56QZP|1|L7High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.9120
66Y6X|1|L7Tetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.8120
76Z6M|1|L7Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.1120
86Z6N|1|L7Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.9120
96Z6L|1|L7Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY3120
106ZM7|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.7120
116OM0|1|EHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.1119
126OLE|1|EHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.1119
136OLI|1|EStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.5119
146OLG|1|A4Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.4119
155AJ0|1|A4Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.5119
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