NR_3.5_56726.20

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V4Q\|1\|CA (rep)	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
2	4V4H\|1\|CA	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
3	4V52\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
4	4V52\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
5	4V54\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
6	4V4Q\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
7	5LZD\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	Electron microscopy	3.4	2016-11-23
8	4V64\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
9	4V6C\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
10	4V54\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
11	5J8A\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
12	4V64\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
13	5IT8\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
14	5J91\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
15	5J5B\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
16	5IT8\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
17	5J91\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
18	5J5B\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
19	4V4H\|1\|AA	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
20	5J7L\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
21	4V7V\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
22	5J8A\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
23	5JC9\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
24	4V7S\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
25	5JC9\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
26	4V57\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
27	4WWW\|1\|QA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
28	5J7L\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
29	5MDV\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
30	4V57\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
31	4V7T\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
32	5J88\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
33	4V9P\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
34	5MDZ\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S ribosome (empty A site)	Electron microscopy	3.1	2016-12-14
35	5MDW\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.06	2016-12-14
36	4YBB\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
37	4V9O\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
38	5IQR\|1\|2	Small subunit ribosomal RNA	SSU rRNA	Escherichia coli	Bacteria	RF00177	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
39	4U1U\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
40	5LZE\|1\|a+ 5LZE\|1\|y+ 5LZE\|1\|v+ 5LZE\|1\|x	Small subunit ribosomal RNA + Selenocysteine transfer RNA + Transfer RNA	16S ribosomal RNA, fMetSec-tRNASec, tRNAfMet, SECIS mRNA	Escherichia coli	Bacteria	RF00177 + RF01852 + RF00005	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	Electron microscopy	3.5	2016-11-23
41	4V50\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
42	4V9O\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
43	5J88\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
44	5AFI\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
45	4U20\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
46	4V50\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
47	5MDY\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.35	2016-12-21
48	4V9P\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
49	4U1U\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
50	5MGP\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	Electron microscopy	3.1	2016-12-14
51	4V6C\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
52	4U26\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
53	4U24\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
54	4YBB\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
55	4U20\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
56	4V7U\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
57	4U27\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
58	4WF1\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
59	4V9P\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
60	4U25\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
61	4V7T\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
62	4V9O\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
63	4U1V\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
64	4WOI\|1\|DA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
65	4V9P\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
66	4V7S\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
67	4WWW\|1\|XA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
68	4V9D\|1\|BA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
69	4WF1\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
70	4U27\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
71	4U1V\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
72	4V9D\|1\|AA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
73	4V7V\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
74	4U25\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
75	4WOI\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
76	4V85\|1\|AA		16S rRNA				Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-ray diffraction	3.2	2014-07-09
77	4U26\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
78	4U24\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
79	4V7U\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
80	3JCE\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
81	5U4I\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	Electron microscopy	3.5	2017-01-11
82	4V9O\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
83	4V9C\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA, mRNA	Escherichia coli	Bacteria	RF00177	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
84	4V9C\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA, mRNA	Escherichia coli	Bacteria	RF00177	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
85	3JBV\|1\|A	Small subunit ribosomal RNA	RNA (1530-MER)	Escherichia coli	Bacteria	RF00177	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.32	2016-01-27

Release history

Release	2.110	2.111
Date	2017-01-13	2017-01-20

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_56726.20	NR_3.5_56726.19	2.110	(84) 5J7L\|1\|BA, 4U1V\|1\|AA, 4V7U\|1\|AA, 4U1U\|1\|CA, 4V7T\|1\|CA, 5J7L\|1\|AA, 4U1U\|1\|AA, 4V7T\|1\|AA, 5J5B\|1\|BA, 3JCE\|1\|a, 4V7S\|1\|CA, 5J5B\|1\|AA, 3JBV\|1\|A, 4V7S\|1\|AA, 5IT8\|1\|BA, 4V6C\|1\|CA, 5IT8\|1\|AA, 4V6C\|1\|AA, 5IQR\|1\|2, 4V64\|1\|CA, 5AFI\|1\|a, 4V64\|1\|AA, 4YBB\|1\|BA, 4V57\|1\|CA, 4YBB\|1\|AA, 4V57\|1\|AA, 4WWW\|1\|XA, 4V54\|1\|CA, 4WWW\|1\|QA, 4V54\|1\|AA, 4WOI\|1\|DA, 4V52\|1\|CA, 4WOI\|1\|AA, 4V52\|1\|AA, 4WF1\|1\|CA, 4V50\|1\|CA, 4WF1\|1\|AA, 4V50\|1\|AA, 4V9P\|1\|HA, 5MGP\|1\|a, 4V4Q\|1\|CA, 4V9P\|1\|FA, 5MDZ\|1\|2, 4V4Q\|1\|AA, 4V9P\|1\|DA, 5MDY\|1\|2, 4V4H\|1\|CA, 4V9P\|1\|BA, 5MDW\|1\|2, 4V4H\|1\|AA, 4V9O\|1\|HA, 5MDV\|1\|2, 4U27\|1\|CA, 4V9O\|1\|FA, 5LZE\|1\|a+5LZE\|1\|y+5LZE\|1\|v+5LZE\|1\|x, 4U27\|1\|AA, 4V9O\|1\|DA, 5LZD\|1\|a, 4U26\|1\|CA, 4V9O\|1\|BA, 5JC9\|1\|BA, 4U26\|1\|AA, 4V9D\|1\|BA, 5JC9\|1\|AA, 4U25\|1\|CA, 4V9D\|1\|AA, 5J91\|1\|BA, 4U25\|1\|AA, 4V9C\|1\|CA, 5J91\|1\|AA, 4U24\|1\|CA, 4V9C\|1\|AA, 5J8A\|1\|BA, 4U24\|1\|AA, 4V85\|1\|AA, 5J8A\|1\|AA, 4U20\|1\|CA, 4V7V\|1\|CA, 5J88\|1\|BA, 4U20\|1\|AA, 4V7V\|1\|AA, 5J88\|1\|AA, 4U1V\|1\|CA, 4V7U\|1\|CA	(1) 5U4I\|1\|a	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_56726.20	NR_3.5_56726.21	2.112	(85) 4V7V\|1\|AA, 4WF1\|1\|CA, 5J88\|1\|BA, 4U20\|1\|AA, 4V52\|1\|AA, 4V7U\|1\|CA, 4WF1\|1\|AA, 5J88\|1\|AA, 4U1V\|1\|CA, 4V50\|1\|CA, 4V7U\|1\|AA, 4V9P\|1\|HA, 5J7L\|1\|BA, 5U4I\|1\|a, 4U1V\|1\|AA, 4V50\|1\|AA, 4V7T\|1\|CA, 4V9P\|1\|FA, 5J7L\|1\|AA, 5MGP\|1\|a, 4U1U\|1\|CA, 4V4Q\|1\|CA, 4V7T\|1\|AA, 4V9P\|1\|DA, 5J5B\|1\|BA, 5MDZ\|1\|2, 4U1U\|1\|AA, 4V4Q\|1\|AA, 4V7S\|1\|CA, 4V9P\|1\|BA, 5J5B\|1\|AA, 5MDY\|1\|2, 3JCE\|1\|a, 4V4H\|1\|CA, 4V7S\|1\|AA, 4V9O\|1\|HA, 5IT8\|1\|BA, 5MDW\|1\|2, 3JBV\|1\|A, 4V4H\|1\|AA, 4V6C\|1\|CA, 4V9O\|1\|FA, 5IT8\|1\|AA, 5MDV\|1\|2, 4U27\|1\|CA, 4V6C\|1\|AA, 4V9O\|1\|DA, 5IQR\|1\|2, 5LZE\|1\|a+5LZE\|1\|y+5LZE\|1\|v+5LZE\|1\|x, 4U27\|1\|AA, 4V64\|1\|CA, 4V9O\|1\|BA, 5AFI\|1\|a, 5LZD\|1\|a, 4U26\|1\|CA, 4V64\|1\|AA, 4V9D\|1\|BA, 4YBB\|1\|BA, 5JC9\|1\|BA, 4U26\|1\|AA, 4V57\|1\|CA, 4V9D\|1\|AA, 4YBB\|1\|AA, 5JC9\|1\|AA, 4U25\|1\|CA, 4V57\|1\|AA, 4V9C\|1\|CA, 4WWW\|1\|XA, 5J91\|1\|BA, 4U25\|1\|AA, 4V54\|1\|CA, 4V9C\|1\|AA, 4WWW\|1\|QA, 5J91\|1\|AA, 4U24\|1\|CA, 4V54\|1\|AA, 4V85\|1\|AA, 4WOI\|1\|DA, 5J8A\|1\|BA, 4U24\|1\|AA, 4V7V\|1\|CA, 4WOI\|1\|AA, 5J8A\|1\|AA, 4U20\|1\|CA, 4V52\|1\|CA	(0)	(1) 5H5U\|1\|h

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V4Q\|1\|CA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	1530
2	4V4H\|1\|CA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	1530
3	4V54\|1\|CA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	1530
4	4V64\|1\|CA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	1530
5	4V52\|1\|CA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	1530
6	4V57\|1\|CA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	1530
7	4V9P\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
8	4V85\|1\|AA	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-RAY DIFFRACTION	3.2	1532
9	4V9O\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
10	4V9P\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
11	4V9P\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
12	4V7U\|1\|AA	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	1533
13	4V7V\|1\|AA	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	1533
14	4V7T\|1\|AA	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	1533
15	4V6C\|1\|AA	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	1533
16	4V7S\|1\|AA	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	1533
17	4WWW\|1\|QA	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	1533
18	4WF1\|1\|AA	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	1538
19	4U1U\|1\|AA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1538
20	4U20\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1538
21	4U1V\|1\|AA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1538
22	4U27\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1538
23	4U25\|1\|AA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1538
24	4U26\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1538
25	4U24\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1538
26	4YBB\|1\|AA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1523
27	5J88\|1\|AA	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	1523
28	5JC9\|1\|AA	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	1523
29	5J7L\|1\|AA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1523
30	5J8A\|1\|AA	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	1523
31	5IT8\|1\|AA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	1523
32	5J91\|1\|AA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1523
33	5J5B\|1\|AA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1523
34	4V9P\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
35	4V9O\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
36	4V9O\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
37	4V9O\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
38	4V9D\|1\|AA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1538
39	5J88\|1\|BA	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	1522
40	5IT8\|1\|BA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	1522
41	5J91\|1\|BA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1522
42	5J5B\|1\|BA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1522
43	5J8A\|1\|BA	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	1522
44	5J7L\|1\|BA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1522
45	5JC9\|1\|BA	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	1522
46	4YBB\|1\|BA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1522
47	4U26\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1539
48	4U24\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1539
49	4U25\|1\|CA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1539
50	4U27\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1539
51	4U1V\|1\|CA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1539
52	4U20\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1539
53	4U1U\|1\|CA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1539
54	4WF1\|1\|CA	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	1539
55	4V7U\|1\|CA	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	1530
56	4V6C\|1\|CA	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	1530
57	4V7T\|1\|CA	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	1530
58	4V7V\|1\|CA	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	1530
59	4V7S\|1\|CA	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	1530
60	4WWW\|1\|XA	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	1530
61	4V4Q\|1\|AA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	1530
62	4V4H\|1\|AA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	1530
63	4V54\|1\|AA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	1530
64	4V52\|1\|AA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	1530
65	4V57\|1\|AA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	1530
66	4V64\|1\|AA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	1530
67	4V50\|1\|CA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	1530
68	4V50\|1\|AA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	1530
69	3JBV\|1\|A	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.32	1530
70	5MGP\|1\|a	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	ELECTRON MICROSCOPY	3.1	1539
71	5MDY\|1\|2	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.35	1523
72	5MDW\|1\|2	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.06	1523
73	5MDZ\|1\|2	Structure of the 70S ribosome (empty A site)	ELECTRON MICROSCOPY	3.1	1523
74	5MDV\|1\|2	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	1523
75	5U4I\|1\|a	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	ELECTRON MICROSCOPY	3.5	1523
76	5IQR\|1\|2	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	1522
77	4V9D\|1\|BA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1539
78	4V9C\|1\|AA	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	1539
79	4WOI\|1\|DA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1539
80	5AFI\|1\|a	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	1528
81	5LZE\|1\|a+5LZE\|1\|y+5LZE\|1\|v+5LZE\|1\|x	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	ELECTRON MICROSCOPY	3.5	1528
82	5LZD\|1\|a	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	ELECTRON MICROSCOPY	3.4	1528
83	3JCE\|1\|a	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	1533
84	4WOI\|1\|AA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1538
85	4V9C\|1\|CA	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	1538

Equivalence class NR_3.5_56726.20 Obsolete

Release history

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