Equivalence class NR_3.5_60049.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3CD6|1|4 (rep) | RNA (5'-R(*CP*CP*(PPU))-3') | Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin | X-ray diffraction | 2.75 | 2008-05-20 | ||||
| 2 | 3CMA|1|5 | RNA (5'-R(*CP*CP*A)-3') | The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.8 | 2008-09-23 | ||||
| 3 | 1VQO|1|4 | 5'-R(*CP*CP*(PPU))-3' | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-ray diffraction | 2.2 | 2005-11-29 | ||||
| 4 | 1QVG|1|3 | Oligonucleotide CCA | Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.9 | 2003-11-11 | ||||
| 5 | 3CME|1|5 | RNA (5'-R(*C*CP*A)-3') | synthetic construct | The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui | X-ray diffraction | 2.95 | 2008-09-23 | |||
| 6 | 7Y38|1|Z | RNA (5'-R(P*CP*CP*A)-3') | in vitro transcription vector pT7-TP(deltai) | Molecular architecture of the chikungunya virus replication complex | Electron microscopy | 2.8 | 2022-12-14 | |||
| 7 | 8OIT|1|B7 | E-site tRNA | Homo sapiens | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 2.9 | 2023-06-14 | |||
| 8 | 8OIR|1|B7 | E-site tRNA | Homo sapiens | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | Electron microscopy | 3.1 | 2023-06-14 | |||
| 9 | 5LZD|1|w | CCA 3' end of E-site tRNASec (low occupancy) | Escherichia coli | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 | |||
| 10 | 8OIQ|1|B7 | E-site tRNA | Sus scrofa | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | Electron microscopy | 3.5 | 2023-06-14 | |||
| 11 | 5LZE|1|w | CCA 3' end of E-site tRNASec (low occupancy) | Escherichia coli | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | Electron microscopy | 3.5 | 2016-11-23 |
Release history
| Release | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3CME|1|5 | The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui | X-RAY DIFFRACTION | 2.95 | 2 |
| 2 | 1VQO|1|4 | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-RAY DIFFRACTION | 2.2 | 2 |
| 3 | 3CD6|1|4 | Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin | X-RAY DIFFRACTION | 2.75 | 2 |
| 4 | 3CMA|1|5 | The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.8 | 3 |
| 5 | 7Y38|1|Z | Molecular architecture of the chikungunya virus replication complex | ELECTRON MICROSCOPY | 2.8 | 3 |
| 6 | 8OIT|1|B7 | 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 2.9 | 3 |
| 7 | 8OIR|1|B7 | 55S human mitochondrial ribosome with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.1 | 3 |
| 8 | 8OIQ|1|B7 | 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA | ELECTRON MICROSCOPY | 3.5 | 3 |
| 9 | 1QVG|1|3 | Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.9 | 3 |
| 10 | 5LZD|1|w | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | ELECTRON MICROSCOPY | 3.4 | 3 |
| 11 | 5LZE|1|w | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | ELECTRON MICROSCOPY | 3.5 | 3 |