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Equivalence class NR_3.5_64918.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16SCF|1|I (rep)cyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
26SCF|1|Kcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
36SCF|1|Mcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
46SCF|1|Lcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
56O6X|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
64BA2|1|R5'-R(*AP*AP*AP*AP)-3'Saccharolobus solfataricusArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-ray diffraction2.52012-10-03
76O6X|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
86O7B|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
96O6V|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
106R7B|1|DRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.122019-10-02
116R9R|1|DDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.72019-10-02
126OV0|1|ERNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
136OV0|1|HRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
146OV0|1|GRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
156O6V|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
166OV0|1|FRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-ray diffraction2.82019-07-31
176O7B|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
186R9R|1|EDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-ray diffraction2.72019-10-02
196R7B|1|ERNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-ray diffraction3.122019-10-02
206O7I|1|IRNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy3.22019-07-31
216O7H|1|KCyclic DNA cA4synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemElectron microscopy2.92019-07-31

Release history

Release3.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.113
Date2019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_64918.3NR_3.5_64918.23.98(17) 6O7B|1|D, 6R7B|1|E, 6O7B|1|C, 6R7B|1|D, 6O6X|1|D, 6OV0|1|H, 6O6X|1|C, 6OV0|1|G, 6O6V|1|D, 6OV0|1|F, 6O6V|1|C, 6OV0|1|E, 4BA2|1|R, 6O7I|1|I, 6R9R|1|E, 6O7H|1|K, 6R9R|1|D(4) 6SCF|1|L, 6SCF|1|K, 6SCF|1|I, 6SCF|1|M(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_64918.3NR_3.5_64918.43.114(21) 6O7I|1|I, 6O7H|1|K, 6O7B|1|D, 6O7B|1|C, 6O6X|1|D, 6SCF|1|M, 6O6X|1|C, 6SCF|1|L, 6O6V|1|D, 6SCF|1|K, 6O6V|1|C, 6SCF|1|I, 4BA2|1|R, 6R9R|1|E, 6R9R|1|D, 6R7B|1|E, 6R7B|1|D, 6OV0|1|H, 6OV0|1|G, 6OV0|1|F, 6OV0|1|E(0) (1) 6SCE|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16R9R|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72
24BA2|1|RArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.54
36O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
46SCF|1|IA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
56OV0|1|ECrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
66OV0|1|HCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
76R7B|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.124
86R9R|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.74
96O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
106O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
116O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
126O7H|1|KCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.94
136O7I|1|ICryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY3.24
146SCF|1|LA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
156SCF|1|KA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
166SCF|1|MA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
176O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
186O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
196R7B|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1X-RAY DIFFRACTION3.122
206OV0|1|FCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
216OV0|1|GCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
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