Equivalence class NR_3.5_64918.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SCE|1|B (rep) | cyclic oligoadenylate | synthetic construct | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-ray diffraction | 1.83 | 4 | 2020-02-19 | |||
| 2 | 6XL1|1|C | cA4 | synthetic construct | crystal structure of cA4-activated Cad1(D294N) | X-ray diffraction | 1.95 | 4 | 2020-12-30 | |||
| 3 | 6SCF|1|I | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 4 | 2019-10-30 | |||
| 4 | 6SCF|1|K | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 4 | 2019-10-30 | |||
| 5 | 6YUD|1|K | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 4 | 2020-08-19 | |||
| 6 | 6YUD|1|O | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 4 | 2020-08-19 | |||
| 7 | 6SCF|1|M | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 4 | 2019-10-30 | |||
| 8 | 6YUD|1|P | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 4 | 2020-08-19 | |||
| 9 | 6SCF|1|L | cyclic oligoadenylate | synthetic construct | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 4 | 2019-10-30 | |||
| 10 | 6YUD|1|M | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 4 | 2020-08-19 | |||
| 11 | 6YUD|1|Q | cyclic tetra-adenylate (cA4) | synthetic construct | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-ray diffraction | 1.84 | 4 | 2020-08-19 | |||
| 12 | 6O6X|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 4 | 2019-07-31 | |||
| 13 | 4BA2|1|R | 5'-R(*AP*AP*AP*AP)-3' | Saccharolobus solfataricus | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-ray diffraction | 2.5 | 4 | 2012-10-03 | |||
| 14 | 6O6X|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 4 | 2019-07-31 | |||
| 15 | 6O7B|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 4 | 2019-07-31 | |||
| 16 | 6O6V|1|C | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 4 | 2019-07-31 | |||
| 17 | 6WXX|1|Y | cA4 | synthetic construct | crystal structure of cA4-activated Cad1 | X-ray diffraction | 3 | 4 | 2020-12-30 | |||
| 18 | 6WXX|1|X | cA4 | synthetic construct | crystal structure of cA4-activated Cad1 | X-ray diffraction | 3 | 4 | 2020-12-30 | |||
| 19 | 6R7B|1|D | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-ray diffraction | 3.12 | 4 | 2019-10-02 | |||
| 20 | 6R9R|1|D | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 4 | 2019-10-02 | |||
| 21 | 6OV0|1|E | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 4 | 2019-07-31 | |||
| 22 | 6OV0|1|H | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 4 | 2019-07-31 | |||
| 23 | 6OV0|1|G | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 3 | 2019-07-31 | |||
| 24 | 6O6V|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 4 | 2019-07-31 | |||
| 25 | 6OV0|1|F | RNA (5'-R(*AP*AP*AP*(A23))-3') | synthetic construct | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-ray diffraction | 2.8 | 3 | 2019-07-31 | |||
| 26 | 6O7B|1|D | Cyclic RNA cA4 | synthetic construct | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 4 | 2019-07-31 | |||
| 27 | 6R9R|1|E | DNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-ray diffraction | 2.7 | 2 | 2019-10-02 | |||
| 28 | 6R7B|1|E | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-ray diffraction | 3.12 | 2 | 2019-10-02 | |||
| 29 | 6O7I|1|I | RNA (5'-R(P*AP*AP*AP*A)-3') | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 3.2 | 4 | 2019-07-31 | |||
| 30 | 6O7H|1|K | Cyclic DNA cA4 | synthetic construct | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | Electron microscopy | 2.9 | 4 | 2019-07-31 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_64918.6 | NR_3.5_64918.5 | 3.159 | (27) 4BA2|1|R, 6O6V|1|C, 6O6V|1|D, 6O6X|1|C, 6O6X|1|D, 6O7B|1|C, 6O7B|1|D, 6O7H|1|K, 6O7I|1|I, 6OV0|1|E, 6OV0|1|F, 6OV0|1|G, 6OV0|1|H, 6R7B|1|D, 6R7B|1|E, 6R9R|1|D, 6R9R|1|E, 6SCE|1|B, 6SCF|1|I, 6SCF|1|K, 6SCF|1|L, 6SCF|1|M, 6YUD|1|K, 6YUD|1|M, 6YUD|1|O, 6YUD|1|P, 6YUD|1|Q | (3) 6WXX|1|X, 6WXX|1|Y, 6XL1|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_64918.6 | NR_3.5_64918.7 | 3.168 | (30) 4BA2|1|R, 6O6V|1|C, 6O6V|1|D, 6O6X|1|C, 6O6X|1|D, 6O7B|1|C, 6O7B|1|D, 6O7H|1|K, 6O7I|1|I, 6OV0|1|E, 6OV0|1|F, 6OV0|1|G, 6OV0|1|H, 6R7B|1|D, 6R7B|1|E, 6R9R|1|D, 6R9R|1|E, 6SCE|1|B, 6SCF|1|I, 6SCF|1|K, 6SCF|1|L, 6SCF|1|M, 6WXX|1|X, 6WXX|1|Y, 6XL1|1|C, 6YUD|1|K, 6YUD|1|M, 6YUD|1|O, 6YUD|1|P, 6YUD|1|Q | (0) | (2) 7BDV|1|F, 7BDV|1|H |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4BA2|1|R | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-RAY DIFFRACTION | 2.5 | 4 | |
| 2 | 6O7B|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 | |
| 3 | 6OV0|1|E | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 4 | |
| 4 | 6OV0|1|H | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 4 | |
| 5 | 6SCF|1|I | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 | |
| 6 | 6SCE|1|B | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-RAY DIFFRACTION | 1.83 | 4 | |
| 7 | 6YUD|1|M | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 | |
| 8 | 6YUD|1|Q | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 | |
| 9 | 6YUD|1|O | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 | |
| 10 | 6YUD|1|P | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 | |
| 11 | 6YUD|1|K | Structure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4) | X-RAY DIFFRACTION | 1.84 | 4 | |
| 12 | 6O6V|1|C | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 | |
| 13 | 6O6X|1|D | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 | |
| 14 | 6R9R|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 4 | |
| 15 | 6R7B|1|D | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-RAY DIFFRACTION | 3.12 | 4 | |
| 16 | 6O7B|1|D | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 | |
| 17 | 6O7H|1|K | Cryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 2.9 | 4 | |
| 18 | 6O7I|1|I | Cryo-EM structure of Csm-crRNA-target RNA ternary bigger complex in complex with cA4 in type III-A CRISPR-Cas system | ELECTRON MICROSCOPY | 3.2 | 4 | |
| 19 | 6O6V|1|D | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 | |
| 20 | 6SCF|1|L | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 | |
| 21 | 6SCF|1|K | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 | |
| 22 | 6SCF|1|M | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 | |
| 23 | 6XL1|1|C | crystal structure of cA4-activated Cad1(D294N) | X-RAY DIFFRACTION | 1.95 | 4 | |
| 24 | 6WXX|1|X | crystal structure of cA4-activated Cad1 | X-RAY DIFFRACTION | 3 | 4 | |
| 25 | 6WXX|1|Y | crystal structure of cA4-activated Cad1 | X-RAY DIFFRACTION | 3 | 4 | |
| 26 | 6O6X|1|C | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 | |
| 27 | 6OV0|1|F | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 | |
| 28 | 6R9R|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2 | X-RAY DIFFRACTION | 2.7 | 2 | |
| 29 | 6OV0|1|G | Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6 | X-RAY DIFFRACTION | 2.8 | 3 | |
| 30 | 6R7B|1|E | Crystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 1 | X-RAY DIFFRACTION | 3.12 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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