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Equivalence class NR_3.5_71199.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15Z1I|1|A (rep)RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction1.92018-05-30
22PWT|1|A+ 2PWT|1|B22-mer of the ribosomal decoding siteCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-ray diffraction1.82007-09-18
35ZEG|1|A+ 5ZEG|1|B+ 5ZEG|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-ray diffraction2.42018-03-21
45BWS|1|A+ 5BWS|1|BRNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)X-ray diffraction2.62016-06-22
53TD1|1|B+ 3TD1|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-ray diffraction2.12011-12-07
64K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-ray diffraction2.52013-07-31
75BWS|1|C+ 5BWS|1|DRNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)X-ray diffraction2.62016-06-22
85ZEI|1|A+ 5ZEI|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.12018-03-21
93BNL|1|A+ 3BNL|1|BA site of bacterial ribosomeCrystal structure of the bacterial ribosomal decoding A site in the presence of [Co(NH3)6]Cl3X-ray diffraction2.62008-06-24
105XZ1|1|C+ 5XZ1|1|DRNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-ray diffraction3.012018-07-18
114P3S|1|B+ 4P3S|1|A5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructCrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.32016-05-04
125XZ1|1|A+ 5XZ1|1|BRNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-ray diffraction3.012018-07-18
132ET5|1|A+ 2ET5|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Ribostamycin and the 16S-RRNA A-SiteX-ray diffraction2.22005-12-13
144PDQ|1|A+ 4PDQ|1|BRNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')synthetic constructCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-ray diffraction32015-01-07
154GPY|1|A+ 4GPY|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-ray diffraction2.82013-04-03
164WCP|1|A+ 4WCP|1|B+ 4WCP|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-ray diffraction2.42015-09-09
175BXK|1|C+ 5BXK|1|DRNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)X-ray diffraction3.12016-06-22
184GPW|1|A+ 4GPW|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-ray diffraction32013-04-03
191MWL|1|A+ 1MWL|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-ray diffraction2.42003-02-18
202ET4|1|A+ 2ET4|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Neomycin B and the 16S-RRNA A-SiteX-ray diffraction2.42005-12-13
214GPX|1|A+ 4GPX|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-ray diffraction2.62013-04-03
225BXK|1|A+ 5BXK|1|BRNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)X-ray diffraction3.12016-06-22
232ESJ|1|A+ 2ESJ|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Lividomycin A and the 16S-Rrna A SiteX-ray diffraction2.22005-12-20
245Z1H|1|B+ 5Z1H|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction2.42018-05-30
252ESI|1|A+ 2ESI|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Kanamycin A and the 16S-Rrna A Site.X-ray diffraction32005-12-20
264WCQ|1|A+ 4WCQ|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.12015-09-09
274F8V|1|A+ 4F8V|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-ray diffraction2.82012-08-15
283WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-ray diffraction2.32014-11-05
294F8U|1|A+ 4F8U|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-ray diffraction22012-08-15
303S4P|1|A+ 3S4P|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-ray diffraction2.562011-09-21
314P20|1|A+ 4P20|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructCrystal structures of the bacterial ribosomal decoding site complexed with amikacinX-ray diffraction2.72014-05-07
321LC4|1|A+ 1LC4|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-ray diffraction2.542003-04-08
332ET3|1|A+ 2ET3|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Gentamicin C1A and the 16S-RRNA A-SiteX-ray diffraction2.82005-12-13
345ZEJ|1|A+ 5ZEJ|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-ray diffraction3.52018-03-21
355ZEM|1|A+ 5ZEM|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-ray diffraction3.12018-03-21
365Z71|1|B+ 5Z71|1|ARNA (5'-R(P*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)X-ray diffraction2.52019-01-30
374WCR|1|A+ 4WCR|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-ray diffraction3.52015-09-09
384WCS|1|A+ 4WCS|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-ray diffraction3.12015-09-09
392BE0|1|A+ 2BE0|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.X-ray diffraction2.632005-12-20
402BEE|1|A+ 2BEE|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Paromomycin derivative JS4 and the 16S-Rrna A SiteX-ray diffraction2.62005-12-20
411J7T|1|A+ 1J7T|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-ray diffraction2.52002-05-18
422G5Q|1|A+ 2G5Q|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structures of the bacterial ribosomal decoding site complexed with amikacin.X-ray diffraction2.72006-10-03
431YRJ|1|A+ 1YRJ|1|BBacterial 16 S Ribosomal RNA A Site OligonucleotideCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-ray diffraction2.72005-06-07
442F4T|1|B+ 2F4T|1|A5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Asite RNA + designer antibioticX-ray diffraction32006-05-02

Release history

Release3.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.110
Date2019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_71199.1NR_3.5_03323.13.75(1) 5ZEI|1|A+5ZEI|1|B(43) 2ET5|1|A+2ET5|1|B, 5ZEM|1|A+5ZEM|1|B, 2ET4|1|A+2ET4|1|B, 5ZEJ|1|A+5ZEJ|1|B, 2ET3|1|A+2ET3|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 2ESJ|1|A+2ESJ|1|B, 5Z71|1|B+5Z71|1|A, 2ESI|1|A+2ESI|1|B, 5Z1I|1|A, 2BEE|1|A+2BEE|1|B, 5Z1H|1|B+5Z1H|1|A, 2BE0|1|A+2BE0|1|B, 5XZ1|1|C+5XZ1|1|D, 1YRJ|1|A+1YRJ|1|B, 5XZ1|1|A+5XZ1|1|B, 1MWL|1|A+1MWL|1|B, 5BXK|1|C+5BXK|1|D, 1LC4|1|A+1LC4|1|B, 5BXK|1|A+5BXK|1|B, 1J7T|1|A+1J7T|1|B, 5BWS|1|C+5BWS|1|D, 5BWS|1|A+5BWS|1|B, 4WCS|1|A+4WCS|1|B, 4WCR|1|A+4WCR|1|B, 4WCQ|1|A+4WCQ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4PDQ|1|A+4PDQ|1|B, 4P3S|1|B+4P3S|1|A, 4P20|1|A+4P20|1|B, 4K32|1|A+4K32|1|B, 4GPY|1|A+4GPY|1|B, 4GPX|1|A+4GPX|1|B, 4GPW|1|A+4GPW|1|B, 4F8V|1|A+4F8V|1|B, 4F8U|1|A+4F8U|1|B, 3WRU|1|A+3WRU|1|B, 3TD1|1|B+3TD1|1|A, 3S4P|1|A+3S4P|1|B, 3BNL|1|A+3BNL|1|B, 2PWT|1|A+2PWT|1|B, 2G5Q|1|A+2G5Q|1|B, 2F4T|1|B+2F4T|1|A(0)
NR_3.5_71199.1NR_3.5_46565.13.75(1) 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C(43) 5BWS|1|A+5BWS|1|B, 4WCS|1|A+4WCS|1|B, 4WCR|1|A+4WCR|1|B, 4WCQ|1|A+4WCQ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4PDQ|1|A+4PDQ|1|B, 4P3S|1|B+4P3S|1|A, 4P20|1|A+4P20|1|B, 4K32|1|A+4K32|1|B, 4GPY|1|A+4GPY|1|B, 4GPX|1|A+4GPX|1|B, 4GPW|1|A+4GPW|1|B, 4F8V|1|A+4F8V|1|B, 4F8U|1|A+4F8U|1|B, 3WRU|1|A+3WRU|1|B, 3TD1|1|B+3TD1|1|A, 3S4P|1|A+3S4P|1|B, 3BNL|1|A+3BNL|1|B, 2PWT|1|A+2PWT|1|B, 2G5Q|1|A+2G5Q|1|B, 2F4T|1|B+2F4T|1|A, 5ZEM|1|A+5ZEM|1|B, 2ET5|1|A+2ET5|1|B, 5ZEJ|1|A+5ZEJ|1|B, 2ET4|1|A+2ET4|1|B, 5ZEI|1|A+5ZEI|1|B, 2ET3|1|A+2ET3|1|B, 5Z71|1|B+5Z71|1|A, 2ESJ|1|A+2ESJ|1|B, 5Z1I|1|A, 2ESI|1|A+2ESI|1|B, 5Z1H|1|B+5Z1H|1|A, 2BEE|1|A+2BEE|1|B, 5XZ1|1|C+5XZ1|1|D, 2BE0|1|A+2BE0|1|B, 5XZ1|1|A+5XZ1|1|B, 1YRJ|1|A+1YRJ|1|B, 5BXK|1|C+5BXK|1|D, 1MWL|1|A+1MWL|1|B, 5BXK|1|A+5BXK|1|B, 1LC4|1|A+1LC4|1|B, 5BWS|1|C+5BWS|1|D, 1J7T|1|A+1J7T|1|B(0)
NR_3.5_71199.1NR_3.5_50848.13.75(1) 5ZEJ|1|A+5ZEJ|1|B(43) 4GPW|1|A+4GPW|1|B, 4F8V|1|A+4F8V|1|B, 4F8U|1|A+4F8U|1|B, 3WRU|1|A+3WRU|1|B, 3TD1|1|B+3TD1|1|A, 3S4P|1|A+3S4P|1|B, 3BNL|1|A+3BNL|1|B, 2PWT|1|A+2PWT|1|B, 2G5Q|1|A+2G5Q|1|B, 2F4T|1|B+2F4T|1|A, 2ET5|1|A+2ET5|1|B, 5ZEM|1|A+5ZEM|1|B, 2ET4|1|A+2ET4|1|B, 5ZEI|1|A+5ZEI|1|B, 2ET3|1|A+2ET3|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 2ESJ|1|A+2ESJ|1|B, 5Z71|1|B+5Z71|1|A, 2ESI|1|A+2ESI|1|B, 5Z1I|1|A, 2BEE|1|A+2BEE|1|B, 5Z1H|1|B+5Z1H|1|A, 2BE0|1|A+2BE0|1|B, 5XZ1|1|C+5XZ1|1|D, 1YRJ|1|A+1YRJ|1|B, 5XZ1|1|A+5XZ1|1|B, 1MWL|1|A+1MWL|1|B, 5BXK|1|C+5BXK|1|D, 1LC4|1|A+1LC4|1|B, 5BXK|1|A+5BXK|1|B, 1J7T|1|A+1J7T|1|B, 5BWS|1|C+5BWS|1|D, 5BWS|1|A+5BWS|1|B, 4WCS|1|A+4WCS|1|B, 4WCR|1|A+4WCR|1|B, 4WCQ|1|A+4WCQ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4PDQ|1|A+4PDQ|1|B, 4P3S|1|B+4P3S|1|A, 4P20|1|A+4P20|1|B, 4K32|1|A+4K32|1|B, 4GPY|1|A+4GPY|1|B, 4GPX|1|A+4GPX|1|B(0)
NR_3.5_71199.1NR_3.5_97151.33.75(41) 3BNL|1|A+3BNL|1|B, 4P3S|1|B+4P3S|1|A, 1YRJ|1|A+1YRJ|1|B, 5XZ1|1|A+5XZ1|1|B, 4P20|1|A+4P20|1|B, 1MWL|1|A+1MWL|1|B, 2PWT|1|A+2PWT|1|B, 2G5Q|1|A+2G5Q|1|B, 5BXK|1|C+5BXK|1|D, 4K32|1|A+4K32|1|B, 1LC4|1|A+1LC4|1|B, 2F4T|1|B+2F4T|1|A, 5BXK|1|A+5BXK|1|B, 4GPY|1|A+4GPY|1|B, 1J7T|1|A+1J7T|1|B, 2ET5|1|A+2ET5|1|B, 5BWS|1|C+5BWS|1|D, 4GPX|1|A+4GPX|1|B, 2ET4|1|A+2ET4|1|B, 5BWS|1|A+5BWS|1|B, 4GPW|1|A+4GPW|1|B, 4WCS|1|A+4WCS|1|B, 2ET3|1|A+2ET3|1|B, 4F8V|1|A+4F8V|1|B, 5ZEM|1|A+5ZEM|1|B, 4WCR|1|A+4WCR|1|B, 2ESJ|1|A+2ESJ|1|B, 4F8U|1|A+4F8U|1|B, 5Z71|1|B+5Z71|1|A, 4WCQ|1|A+4WCQ|1|B, 2ESI|1|A+2ESI|1|B, 3WRU|1|A+3WRU|1|B, 5Z1I|1|A, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 2BEE|1|A+2BEE|1|B, 3TD1|1|B+3TD1|1|A, 5Z1H|1|B+5Z1H|1|A, 4PDQ|1|A+4PDQ|1|B, 2BE0|1|A+2BE0|1|B, 3S4P|1|A+3S4P|1|B, 5XZ1|1|C+5XZ1|1|D(3) 5ZEI|1|A+5ZEI|1|B, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 5ZEJ|1|A+5ZEJ|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_71199.1NR_3.5_71199.23.111(44) 4WCS|1|A+4WCS|1|B, 2ET5|1|A+2ET5|1|B, 5BXK|1|C+5BXK|1|D, 3BNL|1|A+3BNL|1|B, 5Z1I|1|A, 4F8U|1|A+4F8U|1|B, 5ZEJ|1|A+5ZEJ|1|B, 4GPY|1|A+4GPY|1|B, 1MWL|1|A+1MWL|1|B, 4PDQ|1|A+4PDQ|1|B, 2ESI|1|A+2ESI|1|B, 4WCR|1|A+4WCR|1|B, 2ET4|1|A+2ET4|1|B, 5BXK|1|A+5BXK|1|B, 2PWT|1|A+2PWT|1|B, 5Z1H|1|B+5Z1H|1|A, 3WRU|1|A+3WRU|1|B, 5ZEI|1|A+5ZEI|1|B, 4GPX|1|A+4GPX|1|B, 1LC4|1|A+1LC4|1|B, 4P3S|1|B+4P3S|1|A, 2BEE|1|A+2BEE|1|B, 4WCQ|1|A+4WCQ|1|B, 2ET3|1|A+2ET3|1|B, 5BWS|1|C+5BWS|1|D, 2G5Q|1|A+2G5Q|1|B, 5XZ1|1|C+5XZ1|1|D, 3TD1|1|B+3TD1|1|A, 5ZEG|1|A+5ZEG|1|B+5ZEG|1|C, 4GPW|1|A+4GPW|1|B, 1J7T|1|A+1J7T|1|B, 4P20|1|A+4P20|1|B, 2BE0|1|A+2BE0|1|B, 2ESJ|1|A+2ESJ|1|B, 5BWS|1|A+5BWS|1|B, 2F4T|1|B+2F4T|1|A, 5XZ1|1|A+5XZ1|1|B, 3S4P|1|A+3S4P|1|B, 5Z71|1|B+5Z71|1|A, 4F8V|1|A+4F8V|1|B, 4K32|1|A+4K32|1|B, 1YRJ|1|A+1YRJ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5ZEM|1|A+5ZEM|1|B(0) (4) 6JBG|1|A+6JBG|1|B, 6JBG|1|C+6JBG|1|D, 6JBF|1|C+6JBF|1|D, 6JBF|1|A+6JBF|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14F8U|1|A+4F8U|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION222
22PWT|1|A+2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.821
32BE0|1|A+2BE0|1|BComplex Between Paromomycin Derivative JS5-39 and the 16S-Rrna A-Site.X-RAY DIFFRACTION2.6321
42BEE|1|A+2BEE|1|BComplex Between Paromomycin derivative JS4 and the 16S-Rrna A SiteX-RAY DIFFRACTION2.621
53S4P|1|A+3S4P|1|BCrystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogueX-RAY DIFFRACTION2.5621
65Z1H|1|B+5Z1H|1|ACrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION2.423
72F4T|1|B+2F4T|1|AAsite RNA + designer antibioticX-RAY DIFFRACTION323
82ESJ|1|A+2ESJ|1|BComplex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.221
92ET5|1|A+2ET5|1|BComplex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.221
102ET4|1|A+2ET4|1|BComplex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.421
111J7T|1|A+1J7T|1|BComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.521
122ET3|1|A+2ET3|1|BComplex Between Gentamicin C1A and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.821
134F8V|1|A+4F8V|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form)X-RAY DIFFRACTION2.821
144GPY|1|A+4GPY|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-RAY DIFFRACTION2.822
151MWL|1|A+1MWL|1|BCrystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.424
163WRU|1|A+3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.321
172ESI|1|A+2ESI|1|BComplex between Kanamycin A and the 16S-Rrna A Site.X-RAY DIFFRACTION323
182G5Q|1|A+2G5Q|1|BCrystal structures of the bacterial ribosomal decoding site complexed with amikacin.X-RAY DIFFRACTION2.721
194P20|1|A+4P20|1|BCrystal structures of the bacterial ribosomal decoding site complexed with amikacinX-RAY DIFFRACTION2.721
201LC4|1|A+1LC4|1|BCrystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-RAY DIFFRACTION2.5421
211YRJ|1|A+1YRJ|1|BCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-RAY DIFFRACTION2.723
225ZEG|1|A+5ZEG|1|B+5ZEG|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.422
234WCP|1|A+4WCP|1|B+4WCP|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.422
245BXK|1|C+5BXK|1|DCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)X-RAY DIFFRACTION3.123
255BWS|1|C+5BWS|1|DCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)X-RAY DIFFRACTION2.623
263BNL|1|A+3BNL|1|BCrystal structure of the bacterial ribosomal decoding A site in the presence of [Co(NH3)6]Cl3X-RAY DIFFRACTION2.622
275BWS|1|A+5BWS|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F)X-RAY DIFFRACTION2.623
285BXK|1|A+5BXK|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)X-RAY DIFFRACTION3.122
294PDQ|1|A+4PDQ|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-RAY DIFFRACTION323
304WCR|1|A+4WCR|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.521
315ZEJ|1|A+5ZEJ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.521
325ZEM|1|A+5ZEM|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.121
334WCS|1|A+4WCS|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.121
344P3S|1|B+4P3S|1|ACrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.321
355ZEI|1|A+5ZEI|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
364WCQ|1|A+4WCQ|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.121
373TD1|1|B+3TD1|1|ACrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.122
384GPX|1|A+4GPX|1|BCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-RAY DIFFRACTION2.621
394GPW|1|A+4GPW|1|BCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-RAY DIFFRACTION322
404K32|1|A+4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.521
415XZ1|1|A+5XZ1|1|BCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-RAY DIFFRACTION3.0122
425Z1I|1|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION1.921
435XZ1|1|C+5XZ1|1|DCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418X-RAY DIFFRACTION3.0122
445Z71|1|B+5Z71|1|ACrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)X-RAY DIFFRACTION2.522
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