Equivalence class NR_3.5_73426.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7EVO|1|H (rep) | U2 splicesomal small nuclear RNA | U2 snRNA | Homo sapiens | Eukarya | RF00004 | The cryo-EM structure of the human 17S U2 snRNP | Electron microscopy | 2.5 | 2022-08-03 |
| 2 | 8HK1|1|H | U2 snRNA | Homo sapiens | Eukarya | The cryo-EM structure of human pre-17S U2 snRNP | Electron microscopy | 2.7 | 2023-03-08 | ||
| 3 | 7Q4O|1|2+ 7Q4O|1|h | U2 splicesomal small nuclear RNA | U2 snRNA, BPS oligo | Homo sapiens | Eukarya + Synthetic | RF00004 | Substrate-bound A-like U2 snRNP | Electron microscopy | 2.2 | 2022-03-30 |
| 4 | 7Q3L|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA | Homo sapiens | Eukarya | RF00004 | Human 17S U2 snRNP 5' domain | Electron microscopy | 2.3 | 2022-03-30 |
| 5 | 7Q4P|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA | Homo sapiens | Eukarya | RF00004 | U2 snRNP after ATP-dependent remodelling snRNP | Electron microscopy | 2.2 | 2022-03-30 |
| 6 | 6QX9|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA, U6 snRNA, AdML pre-mRNA | Homo sapiens | Eukarya | RF00004 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | Electron microscopy | 3.28 | 2019-04-17 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_73426.4 | NR_3.5_73426.3 | 3.273 | (5) 7Q4P|1|2, 7Q4O|1|2+7Q4O|1|h, 7Q3L|1|2, 7EVO|1|H, 6QX9|1|2 | (1) 8HK1|1|H | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_73426.4 | NR_3.5_73426.5 | 3.281 | (6) 7Q4P|1|2, 7Q4O|1|2+7Q4O|1|h, 7Q3L|1|2, 7EVO|1|H, 6QX9|1|2, 8HK1|1|H | (0) | (2) 7ONB|1|H, 7VPX|1|H |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7EVO|1|H | The cryo-EM structure of the human 17S U2 snRNP | ELECTRON MICROSCOPY | 2.5 | 148 |
| 2 | 8HK1|1|H | The cryo-EM structure of human pre-17S U2 snRNP | ELECTRON MICROSCOPY | 2.7 | 148 |
| 3 | 7Q3L|1|2 | Human 17S U2 snRNP 5' domain | ELECTRON MICROSCOPY | 2.3 | 41 |
| 4 | 6QX9|1|2 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 94 |
| 5 | 7Q4O|1|2+7Q4O|1|h | Substrate-bound A-like U2 snRNP | ELECTRON MICROSCOPY | 2.2 | 24 |
| 6 | 7Q4P|1|2 | U2 snRNP after ATP-dependent remodelling snRNP | ELECTRON MICROSCOPY | 2.2 | 31 |