Equivalence class NR_3.5_78372.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6X1B|1|D (rep) | DNA (5'-R(*GP*U)-3') | synthetic construct | Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with the Product Nucleotide GpU. | X-ray diffraction | 1.97 | 2020-05-27 | |||
| 2 | 6X1B|1|F | DNA (5'-R(*GP*U)-3') | synthetic construct | Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with the Product Nucleotide GpU. | X-ray diffraction | 1.97 | 2020-05-27 | |||
| 3 | 5K77|1|x | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | |||
| 4 | 5K77|1|z | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | |||
| 5 | 5K77|1|v | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | |||
| 6 | 5K77|1|y | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | |||
| 7 | 5K77|1|w | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | |||
| 8 | 7VA6|1|C | RNA (5'-R(P*GP*U)-3') | synthetic construct | PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure | X-ray diffraction | 2.1 | 2022-09-07 | |||
| 9 | 5F6C|1|C | RNA (5'-R(P*GP*U)-3') | Escherichia coli | The structure of E. coli RNase E catalytically inactive mutant with RNA bound | X-ray diffraction | 3 | 2016-12-14 | |||
| 10 | 6I0T|1|B | RNA (5'-R(*GP*U)-3') | Drosophila melanogaster | Crystal structure of DmTailor in complex with GpU | X-ray diffraction | 2 | 2018-12-05 | |||
| 11 | 1B2M|1|C | 5'-R(*GP*(U34))-3' | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-ray diffraction | 2 | 1999-03-25 | ||||
| 12 | 1B2M|1|D | 5'-R(*GP*(U34))-3' | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-ray diffraction | 2 | 1999-03-25 | ||||
| 13 | 1B2M|1|E | 5'-R(*GP*(U34))-3' | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-ray diffraction | 2 | 1999-03-25 |
Release history
| Release | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5F6C|1|C | The structure of E. coli RNase E catalytically inactive mutant with RNA bound | X-RAY DIFFRACTION | 3 | 2 |
| 2 | 6X1B|1|D | Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with the Product Nucleotide GpU. | X-RAY DIFFRACTION | 1.97 | 2 |
| 3 | 5K77|1|x | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 4 | 6X1B|1|F | Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with the Product Nucleotide GpU. | X-RAY DIFFRACTION | 1.97 | 2 |
| 5 | 6I0T|1|B | Crystal structure of DmTailor in complex with GpU | X-RAY DIFFRACTION | 2 | 2 |
| 6 | 1B2M|1|C | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-RAY DIFFRACTION | 2 | 1 |
| 7 | 1B2M|1|E | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-RAY DIFFRACTION | 2 | 1 |
| 8 | 1B2M|1|D | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-RAY DIFFRACTION | 2 | 1 |
| 9 | 5K77|1|y | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 10 | 5K77|1|v | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 11 | 5K77|1|w | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 12 | 5K77|1|z | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 13 | 7VA6|1|C | PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure | X-RAY DIFFRACTION | 2.1 | 2 |