#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18EUG|1|1+ 8EUG|1|2 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (152-MER), RNA (2863-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome State 3Electron microscopy2.82022-11-30
28EUI|1|1+ 8EUI|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (152-MER), RNA (2863-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome (-fkbp39) State 3Electron microscopy3.12022-11-30
38ESQ|1|1+ 8ESQ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (150-MER), RNA (2231-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome State 2Electron microscopy2.82022-11-30
48ETC|1|1+ 8ETC|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (147-MER), RNA (2151-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated nascent 60S ribosome State 4Electron microscopy3.12022-11-30
58ESR|1|1+ 8ESR|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (150-MER), RNA (2142-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome (-fkbp39) State 2Electron microscopy3.22022-11-30
68ETG|1|1+ 8ETG|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (146-MER), RNA (1912-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated 60S nascent ribosome State 3Electron microscopy3.42022-11-30
78ETJ|1|1+ 8ETJ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (144-MER), RNA (1758-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated 60S nascent ribosome State 2Electron microscopy3.22022-11-30
88EV3|1|1+ 8EV3|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1452-MER), RNA (150-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1BElectron microscopy32022-11-30
98EUY|1|1+ 8EUY|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1095-MER), RNA (148-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome (-fkbp39) State 1AElectron microscopy32022-11-30
108EUP|1|1+ 8EUP|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1422-MER), RNA (146-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated 60S nascent ribosome State 1AElectron microscopy3.12022-11-30

Release history

Release3.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.364
Date2022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18EUY|1|1+ 8EUY|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 1AELECTRON MICROSCOPY31433
28EV3|1|1+ 8EV3|1|2Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1BELECTRON MICROSCOPY31452
38EUP|1|1+ 8EUP|1|2Ytm1 associated 60S nascent ribosome State 1AELECTRON MICROSCOPY3.11422
48ESR|1|1+ 8ESR|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 2ELECTRON MICROSCOPY3.22143
58ESQ|1|1+ 8ESQ|1|2Ytm1 associated nascent 60S ribosome State 2ELECTRON MICROSCOPY2.82230
68ETG|1|1+ 8ETG|1|2Fkbp39 associated 60S nascent ribosome State 3ELECTRON MICROSCOPY3.42018
78ETJ|1|1+ 8ETJ|1|2Fkbp39 associated 60S nascent ribosome State 2ELECTRON MICROSCOPY3.21817
88ETC|1|1+ 8ETC|1|2Fkbp39 associated nascent 60S ribosome State 4ELECTRON MICROSCOPY3.12140
98EUI|1|1+ 8EUI|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 3ELECTRON MICROSCOPY3.12855
108EUG|1|1+ 8EUG|1|2Ytm1 associated nascent 60S ribosome State 3ELECTRON MICROSCOPY2.82869

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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