Equivalence class NR_3.5_79496.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5HR7|1|D (rep) | Transfer RNA | tRNA Glu | Escherichia coli | Bacteria | RF00005 | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-ray diffraction | 2.4 | 2016-04-13 |
| 2 | 5HR7|1|C | Transfer RNA | tRNA Glu | Escherichia coli | Bacteria | RF00005 | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-ray diffraction | 2.4 | 2016-04-13 |
| 3 | 2DER|1|D | Transfer RNA | tRNA | RF00005 | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-ray diffraction | 3.1 | 2006-08-15 | ||
| 4 | 2DER|1|C | Transfer RNA | tRNA | RF00005 | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-ray diffraction | 3.1 | 2006-08-15 | ||
| 5 | 2DET|1|C | Transfer RNA | tRNA | RF00005 | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | X-ray diffraction | 3.4 | 2006-08-15 | ||
| 6 | 2DEU|1|C | Transfer RNA | tRNA | RF00005 | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-ray diffraction | 3.4 | 2006-08-15 | ||
| 7 | 2DEU|1|D | Transfer RNA | tRNA | RF00005 | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-ray diffraction | 3.4 | 2006-08-15 |
Release history
| Release | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_79496.2 | NR_3.5_42502.1 | 2.93 | (2) 5HR7|1|C, 5HR7|1|D | (5) 2DER|1|D, 2DEU|1|C, 2DER|1|C, 2DET|1|C, 2DEU|1|D | (0) |
| NR_3.5_79496.2 | NR_3.5_79496.3 | 2.93 | (5) 2DEU|1|C, 2DER|1|C, 2DEU|1|D, 2DER|1|D, 2DET|1|C | (2) 5HR7|1|D, 5HR7|1|C | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2DER|1|D | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-RAY DIFFRACTION | 3.1 | 71 |
| 2 | 2DET|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | X-RAY DIFFRACTION | 3.4 | 70 |
| 3 | 2DEU|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-RAY DIFFRACTION | 3.4 | 74 |
| 4 | 2DEU|1|D | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-RAY DIFFRACTION | 3.4 | 74 |
| 5 | 2DER|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-RAY DIFFRACTION | 3.1 | 74 |
| 6 | 5HR7|1|C | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-RAY DIFFRACTION | 2.4 | 70 |
| 7 | 5HR7|1|D | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-RAY DIFFRACTION | 2.4 | 70 |