NR_3.5_83717.32

Members (97)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	5J8A\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
3	5JC9\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
4	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
5	5IT8\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
6	4WOI\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
7	4WOI\|1\|CA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
8	5J91\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
9	4V9P\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	5J88\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
11	4V9P\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
12	4V9P\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
13	4V9P\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	4V9D\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
15	4V9O\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
16	4V9O\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
17	4WWW\|1\|RA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
18	4V9O\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
19	4V6C\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
20	5J7L\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
21	4U27\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
22	4V7T\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
23	4WF1\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
24	5J8A\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
25	5JC9\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
26	4V7U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
27	4V7V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
28	4V52\|1\|DB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
29	4U24\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
30	4U25\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
31	4V9D\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
32	4U26\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
33	4V7S\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
34	4V57\|1\|DB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
35	4V52\|1\|BB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
36	4V57\|1\|BB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
37	4V9O\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
38	4U1U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
39	4V85\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-ray diffraction	3.2	2014-07-09
40	4V54\|1\|DB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
41	4V64\|1\|DB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
42	4V50\|1\|DB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
43	4V54\|1\|BB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
44	4V64\|1\|BB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
45	4V50\|1\|BB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
46	4U1V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
47	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
48	5J88\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
49	4V9C\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
50	4U20\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
51	4U27\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
52	4V4Q\|1\|DB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
53	4V4Q\|1\|BB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
54	4U25\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
55	4U1U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
56	4V9C\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
57	4U1V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
58	5IT8\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
59	4WF1\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
60	4U24\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
61	4U26\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
62	4U20\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
63	5J91\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
64	4V6C\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
65	4WWW\|1\|YA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
66	4V7T\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
67	4V7V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
68	4V7S\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
69	4V7U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
70	5J5B\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
71	4V4H\|1\|DB	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
72	4V4H\|1\|BB	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
73	5J5B\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
74	5AFI\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
75	5NWY\|1\|N	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
76	5H5U\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Mechanistic insights into the alternative translation termination by ArfA and RF2	Electron microscopy	3.01	2017-01-25
77	5MDV\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
78	5MDW\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.06	2016-12-14
79	5MGP\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	Electron microscopy	3.1	2016-12-14
80	5U9G\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	Electron microscopy	3.2	2017-03-22
81	5U9F\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	Electron microscopy	3.2	2017-03-22
82	5MDZ\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome (empty A site)	Electron microscopy	3.1	2016-12-14
83	5UYM\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	Electron microscopy	3.2	2017-06-07
84	6ENU\|1\|A	Large subunit ribosomal RNA	23S Ribosomal RNA	Escherichia coli	Bacteria	RF02541	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	Electron microscopy	3.1	2017-11-22
85	3JBV\|1\|b	Large subunit ribosomal RNA	RNA (2903-MER)	Escherichia coli	Bacteria	RF02541	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.32	2016-01-27
86	4V80\|1\|BA		23S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
87	4V80\|1\|DA		23S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
88	6ENF\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	Electron microscopy	3.2	2017-11-22
89	5GAE\|1\|A	Large subunit ribosomal RNA	23S rRNA, tRNA CCA end (5'-R(PCPCP*A)-3')	Escherichia coli	Bacteria	RF02541	RNC in complex with a translocating SecYEG	Electron microscopy	3.33	2016-01-27
90	3JCE\|1\|A	Large subunit ribosomal RNA	23 ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
91	5MDY\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.35	2016-12-21
92	5LZD\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	Electron microscopy	3.4	2016-11-23
93	6BU8\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	70S ribosome with S1 domains 1 and 2 (Class 1)	Electron microscopy	3.5	2018-01-31
94	5O2R\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	Electron microscopy	3.4	2017-07-26
95	5LZE\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	Electron microscopy	3.5	2016-11-23
96	5U4I\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	Electron microscopy	3.5	2017-01-11
97	5IQR\|1\|1	Large subunit ribosomal RNA	LSU rRNA	Escherichia coli	Bacteria	RF02541	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04

Release history

Release	3.9
Date	2018-02-16

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_83717.32	NR_3.5_83717.31	3.9	(96) 5NWY\|1\|N, 4V54\|1\|BB, 4WF1\|1\|DA, 5MGP\|1\|A, 4V52\|1\|DB, 4WF1\|1\|BA, 5MDZ\|1\|1, 4V52\|1\|BB, 4V9P\|1\|GA, 5MDY\|1\|1, 4V50\|1\|DB, 4V9P\|1\|EA, 5MDW\|1\|1, 4V50\|1\|BB, 4V9P\|1\|CA, 4V4Q\|1\|DB, 4V9P\|1\|AA, 5MDV\|1\|1, 4V4Q\|1\|BB, 4V9O\|1\|GA, 5LZE\|1\|A, 4V4H\|1\|DB, 4V9O\|1\|EA, 5LZD\|1\|A, 4V4H\|1\|BB, 4V9O\|1\|CA, 5JC9\|1\|DA, 4U27\|1\|DA, 4V9O\|1\|AA, 5JC9\|1\|CA, 4U27\|1\|BA, 4V9D\|1\|DA, 5J91\|1\|DA, 4U26\|1\|DA, 4V9D\|1\|CA, 5J91\|1\|CA, 4U26\|1\|BA, 4V9C\|1\|DA, 5J8A\|1\|DA, 4U25\|1\|DA, 4V9C\|1\|BA, 5J8A\|1\|CA, 4U25\|1\|BA, 4V85\|1\|BA, 5J88\|1\|DA, 4U24\|1\|DA, 4V80\|1\|DA, 5J88\|1\|CA, 4U24\|1\|BA, 4V80\|1\|BA, 5J7L\|1\|DA, 4U20\|1\|DA, 4V7V\|1\|DA, 5J7L\|1\|CA, 4U20\|1\|BA, 4V7V\|1\|BA, 5J5B\|1\|DA, 4U1V\|1\|DA, 4V7U\|1\|DA, 5J5B\|1\|CA, 4U1V\|1\|BA, 4V7U\|1\|BA, 5IT8\|1\|DA, 4U1U\|1\|DA, 4V7T\|1\|DA, 5IT8\|1\|CA, 4U1U\|1\|BA, 4V7T\|1\|BA, 5IQR\|1\|1, 3JCE\|1\|A, 4V7S\|1\|DA, 5H5U\|1\|A, 3JBV\|1\|b, 4V7S\|1\|BA, 5GAE\|1\|A, 6ENU\|1\|A, 4V6C\|1\|DA, 5AFI\|1\|A, 6ENF\|1\|A, 4V6C\|1\|BA, 4YBB\|1\|DA, 5UYM\|1\|01, 4V64\|1\|DB, 4YBB\|1\|CA, 5U9G\|1\|01, 4V64\|1\|BB, 4WWW\|1\|YA, 5U9F\|1\|01, 4V57\|1\|DB, 4WWW\|1\|RA, 5U4I\|1\|A, 4V57\|1\|BB, 4WOI\|1\|CA, 5O2R\|1\|A, 4V54\|1\|D	(1) 6BU8\|1\|01	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_83717.32	NR_3.5_83717.33	3.10	(97) 5IQR\|1\|1, 4V57\|1\|BB, 5J88\|1\|DA, 4V7T\|1\|BA, 5LZE\|1\|A, 4V85\|1\|BA, 4U1U\|1\|BA, 5U4I\|1\|A, 4V9O\|1\|GA, 4U25\|1\|BA, 4WOI\|1\|CA, 4V4Q\|1\|BB, 5H5U\|1\|A, 4V54\|1\|DB, 5J88\|1\|CA, 4V7S\|1\|DA, 5LZD\|1\|A, 4V80\|1\|DA, 3JCE\|1\|A, 4V9O\|1\|EA, 4U24\|1\|DA, 4WOI\|1\|BA, 4V4H\|1\|DB, 5O2R\|1\|A, 5GAE\|1\|A, 4V54\|1\|BB, 5J7L\|1\|DA, 4V7S\|1\|BA, 5JC9\|1\|DA, 4V80\|1\|BA, 3JBV\|1\|b, 4V9O\|1\|CA, 4U24\|1\|BA, 4WF1\|1\|DA, 4V4H\|1\|BB, 5NWY\|1\|N, 6ENU\|1\|A, 5AFI\|1\|A, 4V52\|1\|DB, 5J7L\|1\|CA, 4V6C\|1\|DA, 5JC9\|1\|CA, 4V7V\|1\|DA, 4V9O\|1\|AA, 4U20\|1\|DA, 4WF1\|1\|BA, 4U27\|1\|DA, 5MGP\|1\|A, 6ENF\|1\|A, 4V52\|1\|BB, 5J5B\|1\|DA, 4V6C\|1\|BA, 5J91\|1\|DA, 4V7V\|1\|BA, 4V9D\|1\|DA, 4U20\|1\|BA, 4V9P\|1\|GA, 4U27\|1\|BA, 4YBB\|1\|DA, 5MDZ\|1\|1, 6BU8\|1\|01, 4V50\|1\|DB, 5J5B\|1\|CA, 4V64\|1\|DB, 5J91\|1\|CA, 4V7U\|1\|DA, 4V9D\|1\|CA, 4U1V\|1\|DA, 4V9P\|1\|EA, 4U26\|1\|DA, 4YBB\|1\|CA, 5MDY\|1\|1, 5UYM\|1\|01, 4V50\|1\|BB, 5IT8\|1\|DA, 4V64\|1\|BB, 5J8A\|1\|DA, 4V7U\|1\|BA, 4V9C\|1\|DA, 4U1V\|1\|BA, 4V9P\|1\|CA, 4U26\|1\|BA, 4WWW\|1\|YA, 5MDW\|1\|1, 5U9G\|1\|01, 5IT8\|1\|CA, 4V57\|1\|DB, 5J8A\|1\|CA, 4V7T\|1\|DA, 5MDV\|1\|1, 4V9C\|1\|BA, 4U1U\|1\|DA, 4V9P\|1\|AA, 4U25\|1\|DA, 4WWW\|1\|R	(0)	(2) 6C4H\|1\|A, 6C4I\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V57\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	2841
2	4V52\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	2841
3	4V64\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	2841
4	4V4H\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	2841
5	4V4Q\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	2841
6	4V54\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	2841
7	4V50\|1\|DB	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	2841
8	5J88\|1\|DA	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	2886
9	5IT8\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	2886
10	5JC9\|1\|DA	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	2886
11	5J7L\|1\|DA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2886
12	5J8A\|1\|DA	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	2886
13	5J91\|1\|DA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2886
14	5J5B\|1\|DA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2886
15	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
16	4V7S\|1\|BA	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	2854
17	4WWW\|1\|RA	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	2854
18	4V80\|1\|BA	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	2854
19	4V6C\|1\|BA	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	2854
20	4V7T\|1\|BA	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	2854
21	4V7U\|1\|BA	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	2854
22	4V7V\|1\|BA	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	2854
23	4WOI\|1\|CA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
24	4V9C\|1\|BA	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	2897
25	4V9D\|1\|DA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2896
26	4U1U\|1\|DA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
27	4U20\|1\|DA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
28	4U1V\|1\|DA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
29	4WF1\|1\|DA	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	2897
30	4U27\|1\|DA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
31	4U25\|1\|DA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
32	4U26\|1\|DA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
33	4U24\|1\|DA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
34	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
35	5J91\|1\|CA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2876
36	5J5B\|1\|CA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2876
37	5J8A\|1\|CA	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	2876
38	5J7L\|1\|CA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2875
39	5JC9\|1\|CA	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	2876
40	5IT8\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	2876
41	5J88\|1\|CA	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	2876
42	4V7U\|1\|DA	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	2841
43	4V7V\|1\|DA	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	2841
44	4V7S\|1\|DA	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	2841
45	4V80\|1\|DA	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	2841
46	4WWW\|1\|YA	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	2841
47	4V7T\|1\|DA	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	2841
48	4V6C\|1\|DA	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	2841
49	4V50\|1\|BB	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	2841
50	4V4Q\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	2841
51	4V4H\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	2841
52	4V52\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	2841
53	4V57\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	2841
54	4V64\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	2841
55	4V54\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	2841
56	4V9P\|1\|EA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
57	4V9O\|1\|EA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
58	4V9O\|1\|GA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
59	4V9P\|1\|GA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
60	4V9P\|1\|AA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
61	4V9O\|1\|AA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
62	4V9O\|1\|CA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
63	4V9P\|1\|CA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
64	4V85\|1\|BA	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-RAY DIFFRACTION	3.2	2853
65	3JCE\|1\|A	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	2903
66	5H5U\|1\|A	Mechanistic insights into the alternative translation termination by ArfA and RF2	ELECTRON MICROSCOPY	3.01	2902
67	5GAE\|1\|A	RNC in complex with a translocating SecYEG	ELECTRON MICROSCOPY	3.33	2884
68	5MDY\|1\|1	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.35	2881
69	5MDV\|1\|1	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	2881
70	5MDW\|1\|1	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.06	2881
71	5MDZ\|1\|1	Structure of the 70S ribosome (empty A site)	ELECTRON MICROSCOPY	3.1	2881
72	5NWY\|1\|N	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	2898
73	5LZD\|1\|A	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	ELECTRON MICROSCOPY	3.4	2879
74	5LZE\|1\|A	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	ELECTRON MICROSCOPY	3.5	2876
75	6BU8\|1\|01	70S ribosome with S1 domains 1 and 2 (Class 1)	ELECTRON MICROSCOPY	3.5	2903
76	5U9G\|1\|01	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	ELECTRON MICROSCOPY	3.2	2903
77	5U9F\|1\|01	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	ELECTRON MICROSCOPY	3.2	2903
78	5O2R\|1\|A	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	ELECTRON MICROSCOPY	3.4	2900
79	5MGP\|1\|A	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	ELECTRON MICROSCOPY	3.1	2900
80	5UYM\|1\|01	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	ELECTRON MICROSCOPY	3.2	2903
81	5AFI\|1\|A	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	2876
82	5IQR\|1\|1	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	2882
83	5U4I\|1\|A	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	ELECTRON MICROSCOPY	3.5	2887
84	6ENF\|1\|A	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	ELECTRON MICROSCOPY	3.2	2807
85	6ENU\|1\|A	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	ELECTRON MICROSCOPY	3.1	2871
86	4U24\|1\|BA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
87	4U26\|1\|BA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
88	4U25\|1\|BA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
89	4U27\|1\|BA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
90	4WF1\|1\|BA	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	2897
91	4U1V\|1\|BA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
92	4U20\|1\|BA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
93	4U1U\|1\|BA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
94	4V9D\|1\|CA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2897
95	4V9C\|1\|DA	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	2897
96	4WOI\|1\|BA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
97	3JBV\|1\|b	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.32	2903

Equivalence class NR_3.5_83717.32 Obsolete

Release history

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