RNA 3D Hub //

Equivalence class NR_3.5_83717.6 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|DA (rep)Large subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24V54|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
34V54|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
44WWW|1|RALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
54V7T|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
64V6C|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
74V52|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
84V7S|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
94V52|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
104V4Q|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
114V7U|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
124V4Q|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
134V50|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
144V9P|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
154V50|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
164V85|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
174V4H|1|DBLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
184V9O|1|EALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
194V4H|1|BBLarge subunit ribosomal RNA23S RIBOSOMAL RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
204V57|1|BBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
214V7V|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
224V64|1|BBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
234V57|1|DBLarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
244V64|1|DBLarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
254V9D|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
264U27|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
274U25|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
284U24|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
294V9P|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
304V9P|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
314V9O|1|AALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
324WF1|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
334U1U|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
344V9O|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
354U1V|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
364V9P|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
374U20|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
384U26|1|BALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
394YBB|1|CALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
405AFI|1|ALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF025412.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
414V9D|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
424U1U|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
434U20|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
444V6C|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
454V9C|1|DALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
464U1V|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
474U25|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
484V9O|1|GALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
494U27|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
504V7S|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
514V7T|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
524V7V|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
534WF1|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
544WWW|1|YALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
554U24|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
564U26|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
574V9C|1|BALarge subunit ribosomal RNA23S ribosomal RNAEscherichia coliBacteriaRF02541Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
584V7U|1|DALarge subunit ribosomal RNA23S rRNAEscherichia coliBacteriaRF02541Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09

Release history

Release2.192.202.212.222.232.242.252.262.272.282.29
Date2015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_83717.6NR_all_83717.52.19(58) 4V7T|1|BA, 4V4Q|1|DB, 4V9O|1|EA, 4V7S|1|BA, 4U1V|1|BA, 4V4H|1|DB, 4V9O|1|CA, 4V7U|1|DA, 4U1U|1|BA, 4V52|1|BB, 4V9P|1|CA, 4V7T|1|DA, 4U20|1|DA, 4V50|1|BB, 4V9P|1|AA, 4U1V|1|DA, 4V54|1|DB, 4WF1|1|DA, 4U25|1|BA, 4V7V|1|BA, 4V52|1|DB, 4V9P|1|GA, 4U24|1|BA, 4V64|1|BB, 4YBB|1|CA, 4U26|1|DA, 4V9C|1|DA, 4V57|1|DB, 4WWW|1|RA, 4U26|1|BA, 4V85|1|BA, 4V4H|1|BB, 4V9O|1|AA, 4V6C|1|BA, 4YBB|1|DA, 4U27|1|DA, 4V9D|1|CA, 4V9O|1|GA, 4V7S|1|DA, 4V4Q|1|BB, 4V6C|1|DA, 4U1U|1|DA, 4V9P|1|EA, 4V7U|1|BA, 4V50|1|DB, 4U20|1|BA, 4V7V|1|DA, 4V54|1|BB, 4WF1|1|BA, 4U24|1|DA, 4WWW|1|YA, 4V9C|1|BA, 4V57|1|BB, 4U25|1|DA, 5AFI|1|A, 4V9D|1|DA, 4V64|1|DB, 4U27|1|BA(0) (65) 4V4W|1|B0, 4V47|1|A0, 4V75|1|BA, 4V72|1|BA, 3J8G|1|B, 4V6Z|1|BA, 4V56|1|DB, 4V5B|1|AB, 4V6T|1|BA, 4V55|1|DB, 4V7C|1|BA, 4V79|1|BA, 4V53|1|BB, 4V76|1|BA, 4V66|1|BB, 4V73|1|BA, 4V5Y|1|DB, 2RDO|1|B, 4V5B|1|CB, 5AKA|1|B, 4V7D|1|AA, 4V6L|1|BB, 4V7A|1|BA, 4V6E|1|BA, 4V6E|1|DA, 3J7Z|1|A, 4V6D|1|BA, 3DG4|1|B, 3BBX|1|B, 4V6S|1|AB, 1C2W|1|B, 4V6P|1|BB, 4V6N|1|AB, 3DG5|1|B, 4V6V|1|BA, 4V6R|1|BB, 4V48|1|A0, 4CSU|1|B, 4V71|1|BA, 4V56|1|BB, 4V53|1|DB, 4V77|1|BA, 4V65|1|BB, 4V5H|1|BB, 4V7I|1|A8, 4V7B|1|BA, 4V6Q|1|BB, 4V6K|1|AB, 4V6D|1|DA, 3DG0|1|B, 2J28|1|B, 4V6O|1|BB, 3J5L|1|A, 4V74|1|BA, 4V6Y|1|BA, 4V4V|1|B0, 4V78|1|BA, 4UY8|1|A, 4V89|1|BA, 4V55|1|BB, 4V5Y|1|BB, 3DG2|1|B, 4V6M|1|B8, 4V69|1|BB, 4V70|1|BA

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V57|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
24V52|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
34V64|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
44V54|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
54V4H|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
64V4Q|1|DBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
74V50|1|DBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
84YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
94V7V|1|BACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292854
104V7T|1|BACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192854
114V7S|1|BACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252854
124WWW|1|RACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12854
134V6C|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192854
144V7U|1|BACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12854
154V85|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22853
164V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
174V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
184V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
194V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
204V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
214V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
224V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
234V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
244V9C|1|BAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
254V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
264U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
274U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
284U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
294WF1|1|DACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
304U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
314U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
324U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
334U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
344YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
354WWW|1|YACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12841
364V7S|1|DACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252841
374V7V|1|DACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292841
384V7T|1|DACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192841
394V6C|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192841
404V7U|1|DACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12841
414V50|1|BBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
424V64|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
434V57|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
444V52|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
454V4H|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
464V4Q|1|BBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
474V54|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
485AFI|1|A2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92876
494U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
504U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
514U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
524U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
534WF1|1|BACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
544U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
554U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
564U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
574V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897
584V9C|1|DAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
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