BGSU RNA Site //

Equivalence class NR_3.5_83891.19 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14WF9|1|Y (rep)5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.432015-10-21
24WFA|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.392015-10-21
34WFB|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.432015-10-21
45NRG|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.442017-08-09
56S0Z|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.32019-08-21
66S0X|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
76HMA|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitElectron microscopy2.652018-11-14
87ASM|1|B5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 50S after 30 minutes incubation at 37CElectron microscopy2.482021-11-17
97ASP|1|35S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.862021-11-17
105NGM|1|AB5S ribosomal RNA5S Ribosomal RNAStaphylococcus aureusBacteriaRF000012.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
117ASO|1|C5S ribosomal RNA5SStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.112021-11-17
127NHM|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0000170S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
137NHL|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00001VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
146YEF|1|B5S ribosomal RNA5S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0000170S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
157ASN|1|B5S ribosomal RNA5SStaphylococcus aureusBacteriaRF00001Staphylococcus aureus 50S after 30 minutes incubation a 37CElectron microscopy2.732021-11-17
166SJ6|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureusElectron microscopy3.232020-04-08
176S12|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).Electron microscopy3.22019-08-21

Release history

Release3.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.215
Date2021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_83891.19NR_3.5_83891.183.205(13) 6HMA|1|B, 5NRG|1|Y, 7NHM|1|B, 5NGM|1|AB, 7NHL|1|B, 4WFB|1|Y, 6YEF|1|B, 4WFA|1|Y, 6SJ6|1|B, 4WF9|1|Y, 6S12|1|B, 6S0Z|1|B, 6S0X|1|B(4) 7ASM|1|B, 7ASP|1|3, 7ASO|1|C, 7ASN|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_83891.19NR_3.5_83891.203.216(17) 4WFB|1|Y, 4WFA|1|Y, 4WF9|1|Y, 7NHM|1|B, 7NHL|1|B, 7ASP|1|3, 7ASO|1|C, 7ASN|1|B, 7ASM|1|B, 6YEF|1|B, 6SJ6|1|B, 6S12|1|B, 6S0Z|1|B, 6S0X|1|B, 6HMA|1|B, 5NRG|1|Y, 5NGM|1|AB(0) (1) 7P48|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17ASO|1|CStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.11114
27ASP|1|3Staphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.86114
35NRG|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.44114
44WF9|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.43114
54WFB|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.43114
64WFA|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.39114
76S12|1|BErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.2115
86S0X|1|BErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.42115
96S0Z|1|BErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.3114
105NGM|1|AB2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.9115
117NHL|1|BVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.1113
127NHM|1|B70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.1113
136HMA|1|BImproved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitELECTRON MICROSCOPY2.65115
147ASM|1|BStaphylococcus aureus 50S after 30 minutes incubation at 37CELECTRON MICROSCOPY2.48115
156YEF|1|B70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.2115
166SJ6|1|BCryo-EM structure of 50S-RsfS complex from Staphylococcus aureusELECTRON MICROSCOPY3.23112
177ASN|1|BStaphylococcus aureus 50S after 30 minutes incubation a 37CELECTRON MICROSCOPY2.73106