Equivalence class NR_3.5_83891.19 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 4WF9|1|Y (rep) | 5S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
2 | 4WFA|1|Y | 5S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2015-10-21 |
3 | 4WFB|1|Y | 5S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
4 | 5NRG|1|Y | 5S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2017-08-09 |
5 | 6S0Z|1|B | 5S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2019-08-21 |
6 | 6S0X|1|B | 5S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2019-08-21 |
7 | 6HMA|1|B | 5S ribosomal RNA | Staphylococcus aureus | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2018-11-14 |
8 | 7ASM|1|B | 5S rRNA | Staphylococcus aureus | Staphylococcus aureus 50S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.48 | 2021-11-17 |
9 | 7ASP|1|3 | 5S rRNA | Staphylococcus aureus | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 2021-11-17 |
10 | 5NGM|1|AB | 5S Ribosomal RNA | Staphylococcus aureus | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2017-10-04 |
11 | 7ASO|1|C | 5S | Staphylococcus aureus | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 2021-11-17 |
12 | 7NHM|1|B | 5S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2021-05-05 |
13 | 7NHL|1|B | 5S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2021-05-05 |
14 | 6YEF|1|B | 5S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2021-01-27 |
15 | 7ASN|1|B | 5S | Staphylococcus aureus | Staphylococcus aureus 50S after 30 minutes incubation a 37C | ELECTRON MICROSCOPY | 2.73 | 2021-11-17 |
16 | 6SJ6|1|B | 5S ribosomal RNA | Staphylococcus aureus | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2020-04-08 |
17 | 6S12|1|B | 5S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2019-08-21 |
Release history
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_3.5_83891.19 | NR_3.5_83891.20 | 3.216 | (17) 6SJ6|1|B, 6S12|1|B, 6S0Z|1|B, 6S0X|1|B, 6HMA|1|B, 5NRG|1|Y, 5NGM|1|AB, 4WFB|1|Y, 4WFA|1|Y, 4WF9|1|Y, 7NHM|1|B, 7NHL|1|B, 7ASP|1|3, 7ASO|1|C, 7ASN|1|B, 7ASM|1|B, 6YEF|1|B | (0) | (1) 7P48|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 7ASO|1|C | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 114 |
2 | 7ASP|1|3 | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 114 |
3 | 5NRG|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 114 |
4 | 4WF9|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 114 |
5 | 4WFB|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 114 |
6 | 4WFA|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 114 |
7 | 6S12|1|B | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 115 |
8 | 6S0X|1|B | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 115 |
9 | 6S0Z|1|B | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 114 |
10 | 5NGM|1|AB | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 115 |
11 | 7NHL|1|B | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 113 |
12 | 7NHM|1|B | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 113 |
13 | 6HMA|1|B | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 115 |
14 | 7ASM|1|B | Staphylococcus aureus 50S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.48 | 115 |
15 | 6YEF|1|B | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 115 |
16 | 6SJ6|1|B | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 112 |
17 | 7ASN|1|B | Staphylococcus aureus 50S after 30 minutes incubation a 37C | ELECTRON MICROSCOPY | 2.73 | 106 |