Equivalence class NR_3.5_87196.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7PWG|1|1+ 7PWG|1|4 (rep) | Large subunit ribosomal RNA | rRNA 28S, rRNA 5.8S, P-site tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution | Electron microscopy | 2.75 | 2022-04-20 |
| 2 | 7PWO|1|1+ 7PWO|1|42 | Large subunit ribosomal RNA | rRNA 28S, rRNA 5.8S, P-site tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF02543 | Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution | Electron microscopy | 2.75 | 2022-04-20 |
| 3 | 8BRM|1|Lt+ 8BRM|1|LD | Large Subunit rRNA, 5.8S rRNA | Giardia lamblia ATCC 50803 | Eukarya | Giardia ribosome in POST-T state, no E-site tRNA (A6) | Electron microscopy | 3.33 | 2023-03-15 | ||
| 4 | 8BR8|1|Lt+ 8BR8|1|LD | Large Subunit rRNA, 5.8S rRNA | Giardia lamblia ATCC 50803 | Eukarya | Giardia ribosome in POST-T state (A1) | Electron microscopy | 3.35 | 2023-03-15 | ||
| 5 | 8BSI|1|Lt+ 8BSI|1|LD | Large Subunit rRNA, 5.8S rRNA | Giardia intestinalis | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | Electron microscopy | 3.4 | 2023-03-15 |
Release history
| Release | 3.274 |
|---|---|
| Date | 2023-03-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_87196.1 | NR_3.5_24697.1 | 3.274 | (2) 7PWO|1|1+7PWO|1|42, 7PWG|1|1+7PWG|1|4 | (3) 8BSI|1|Lt+8BSI|1|LD, 8BRM|1|Lt+8BRM|1|LD, 8BR8|1|Lt+8BR8|1|LD | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_87196.1 | NR_3.5_00138.1 | 3.275 | (5) 7PWG|1|1+7PWG|1|4, 8BSI|1|Lt+8BSI|1|LD, 8BRM|1|Lt+8BRM|1|LD, 8BR8|1|Lt+8BR8|1|LD, 7PWO|1|1+7PWO|1|42 | (0) | (1) 8BTR|1|Lt+8BTR|1|LD |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8BRM|1|Lt+8BRM|1|LD | Giardia ribosome in POST-T state, no E-site tRNA (A6) | ELECTRON MICROSCOPY | 3.33 | 2594 |
| 2 | 7PWO|1|1+7PWO|1|42 | Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution | ELECTRON MICROSCOPY | 2.75 | 2424 |
| 3 | 7PWG|1|1+7PWG|1|4 | Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution | ELECTRON MICROSCOPY | 2.75 | 2426 |
| 4 | 8BR8|1|Lt+8BR8|1|LD | Giardia ribosome in POST-T state (A1) | ELECTRON MICROSCOPY | 3.35 | 2593 |
| 5 | 8BSI|1|Lt+8BSI|1|LD | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | ELECTRON MICROSCOPY | 3.4 | 2593 |