BGSU RNA Site //

Equivalence class NR_3.5_87196.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17PWG|1|1+ 7PWG|1|4 (rep)Large subunit ribosomal RNArRNA 28S, rRNA 5.8S, P-site tRNAGiardia lamblia ATCC 50803EukaryaRF02543Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolutionElectron microscopy2.752022-04-20
27PWO|1|1+ 7PWO|1|42Large subunit ribosomal RNArRNA 28S, rRNA 5.8S, P-site tRNAGiardia lamblia ATCC 50803EukaryaRF02543Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolutionElectron microscopy2.752022-04-20
38BRM|1|Lt+ 8BRM|1|LDLarge Subunit rRNA, 5.8S rRNAGiardia lamblia ATCC 50803EukaryaGiardia ribosome in POST-T state, no E-site tRNA (A6)Electron microscopy3.332023-03-15
48BR8|1|Lt+ 8BR8|1|LDLarge Subunit rRNA, 5.8S rRNAGiardia lamblia ATCC 50803EukaryaGiardia ribosome in POST-T state (A1)Electron microscopy3.352023-03-15
58BSI|1|Lt+ 8BSI|1|LDLarge Subunit rRNA, 5.8S rRNAGiardia intestinalisGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)Electron microscopy3.42023-03-15

Release history

Release3.274
Date2023-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_87196.1NR_3.5_24697.13.274(2) 7PWO|1|1+7PWO|1|42, 7PWG|1|1+7PWG|1|4(3) 8BSI|1|Lt+8BSI|1|LD, 8BRM|1|Lt+8BRM|1|LD, 8BR8|1|Lt+8BR8|1|LD(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_87196.1NR_3.5_00138.13.275(5) 8BSI|1|Lt+8BSI|1|LD, 8BRM|1|Lt+8BRM|1|LD, 8BR8|1|Lt+8BR8|1|LD, 7PWO|1|1+7PWO|1|42, 7PWG|1|1+7PWG|1|4(0) (1) 8BTR|1|Lt+8BTR|1|LD

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18BRM|1|Lt+8BRM|1|LDGiardia ribosome in POST-T state, no E-site tRNA (A6)ELECTRON MICROSCOPY3.332594
27PWO|1|1+7PWO|1|42Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolutionELECTRON MICROSCOPY2.752424
37PWG|1|1+7PWG|1|4Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolutionELECTRON MICROSCOPY2.752426
48BR8|1|Lt+8BR8|1|LDGiardia ribosome in POST-T state (A1)ELECTRON MICROSCOPY3.352593
58BSI|1|Lt+8BSI|1|LDGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)ELECTRON MICROSCOPY3.42593