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Equivalence class NR_3.5_88987.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15DM6|1|X (rep)Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction2.92015-11-11
24IOA|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IO9|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
42ZJR|1|XLarge subunit ribosomal RNAribosomal 23S RNADeinococcus radioduransBacteriaRF02541Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
53CF5|1|XLarge subunit ribosomal RNARRNA-23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
62ZJQ|1|XLarge subunit ribosomal RNAribosomal 23S RNADeinococcus radioduransBacteriaRF02541Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
73DLL|1|XLarge subunit ribosomal RNArRNA-23S ribosomal RNADeinococcus radioduransBacteriaRF02541The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
85DM7|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-ray diffraction32015-11-11
92AAR|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-ray diffraction3.52005-08-23
102OGM|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-ray diffraction3.52007-05-01
113PIO|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23
122D3O|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-ray diffraction3.352005-12-06
131Y69|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
143PIP|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
151JZY|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.52001-10-26
161K01|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.52001-10-26
171JZX|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.12001-10-26
181J5A|1|ALarge subunit ribosomal RNA23S RRNADeinococcus radioduransBacteriaRF02541STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-ray diffraction3.52002-03-08
192O44|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-ray diffraction3.32007-12-04
201NWX|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
211OND|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-ray diffraction3.42003-04-15
221NWY|1|0Large subunit ribosomal RNA23S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
231NKW|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
241P9X|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-ray diffraction3.42003-08-05
251NJP|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-ray diffraction3.52003-02-11
261SM1|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
271XBP|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01

Release history

Release2.492.502.512.522.532.54
Date2015-11-132015-11-202015-11-272015-12-042015-12-112015-12-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_88987.3NR_all_88987.22.49(25) 1XBP|1|0, 2ZJR|1|X, 2OGM|1|0, 4IO9|1|X, 1NJP|1|0, 3PIO|1|X, 1JZY|1|A, 1NWY|1|0, 4IOA|1|X, 1Y69|1|0, 1P9X|1|0, 2ZJQ|1|X, 2O44|1|A, 3PIP|1|X, 1K01|1|A, 3DLL|1|X, 1J5A|1|A, 1OND|1|0, 1NWX|1|0, 2AAR|1|0, 2D3O|1|0, 3CF5|1|X, 1NKW|1|0, 1SM1|1|0, 1JZX|1|A(2) 5DM6|1|X, 5DM7|1|X(14) 1NJN|1|0, 4IOC|1|X, 1Z58|1|2, 1JZZ|1|A, 3FWO|1|A, 2O45|1|A, 2OGO|1|0, 2ZJP|1|X, 2O43|1|A, 3JQ4|1|A, 2OGN|1|0, 4U67|1|X, 1NJM|1|0, 1NJO|1|0

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12D3O|1|0Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-RAY DIFFRACTION3.352802
25DM7|1|XCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION32780
35DM6|1|XCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.92780
43PIP|1|XCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.452644
53PIO|1|XCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.252657
64IO9|1|XCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
74IOA|1|XCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
82ZJR|1|XRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.912686
93CF5|1|XThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.32686
102ZJQ|1|XInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.32686
113DLL|1|XThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.52686
122O44|1|AStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-RAY DIFFRACTION3.32766
132OGM|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-RAY DIFFRACTION3.52766
142AAR|1|0Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-RAY DIFFRACTION3.52766
151P9X|1|0THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-RAY DIFFRACTION3.42738
161SM1|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.422766
171XBP|1|0Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.52766
181OND|1|0THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-RAY DIFFRACTION3.42765
191NKW|1|0Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.12766
201NWX|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.52766
211NWY|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.32766
221NJP|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-RAY DIFFRACTION3.52766
231J5A|1|ASTRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-RAY DIFFRACTION3.52774
241JZY|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
251JZX|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.12774
261K01|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
271Y69|1|0RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.332766
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