#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A5+ 4V88|1|A8 (rep)25S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
34U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
44U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
54U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
64U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
74U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
94U4Z|1|1+ 4U4Z|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
105LYB|1|5+ 5LYB|1|825S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
115DGV|1|5+ 5DGV|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
124U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
135I4L|1|5+ 5I4L|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
144U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
154U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
164U55|1|1+ 4U55|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
174U4N|1|1+ 4U4N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
184U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
195FCJ|1|5+ 5FCJ|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
205DGV|1|1+ 5DGV|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
214U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
225DC3|1|5+ 5DC3|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
234U4Y|1|5+ 4U4Y|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
245FCJ|1|1+ 5FCJ|1|425S ribosomal RNA, 5.8S ribosomal RNAStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
254U3N|1|5+ 4U3N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
265DAT|1|1+ 5DAT|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
274U4N|1|5+ 4U4N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
285LYB|1|1+ 5LYB|1|425S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
294U6F|1|1+ 4U6F|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
304U50|1|5+ 4U50|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
314U50|1|1+ 4U50|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
324U55|1|5+ 4U55|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
334U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
345I4L|1|1+ 5I4L|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
354U4Z|1|5+ 4U4Z|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
364U3N|1|1+ 4U3N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
374U53|1|5+ 4U53|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
385FCI|1|1+ 5FCI|1|425S ribosomal RNA, 5.8S ribosomal RNAStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
394U4Y|1|1+ 4U4Y|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
405APO|1|5+ 5APO|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
415DAT|1|5+ 5DAT|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
424U51|1|1+ 4U51|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
435DC3|1|1+ 5DC3|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
444U51|1|5+ 4U51|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
454U6F|1|5+ 4U6F|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
465TGA|1|1+ 5TGA|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
475DGF|1|5+ 5DGF|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
485DGF|1|1+ 5DGF|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
494U53|1|1+ 4U53|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
505TGA|1|5+ 5TGA|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
514U56|1|1+ 4U56|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
525FCI|1|5+ 5FCI|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
534U56|1|5+ 4U56|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
545JUP|1|B+ 5JUP|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
553JCT|1|1+ 3JCT|1|2RDN25-1 rRNA, RDN58-1 rRNACryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01

Release history

Release2.1062.1072.1082.1092.110
Date2016-12-162016-12-232016-12-302017-01-062017-01-13

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15DGF|1|5+5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33169
25DAT|1|5+5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153169
35DC3|1|5+5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253169
45FCI|1|5+5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43150
55FCJ|1|5+5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13150
65TGA|1|5+5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33152
75LYB|1|5+5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253150
85I4L|1|5+5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
94U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
104U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
114U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
124U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
134U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
144U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
154U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
164U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
174U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
184U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
194U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
204U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
214V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
224U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
234U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
244U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
254U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
265DGV|1|5+5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13149
275APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
285FCI|1|1+5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43149
295DC3|1|1+5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253149
304U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
314U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
324U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
334U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
344V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
355LYB|1|1+5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253149
365I4L|1|1+5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
375TGA|1|1+5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33151
384U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
394U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
404U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
414U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
424U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
434U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
444U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
454U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
464U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
474U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
484U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
494U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
505FCJ|1|1+5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13149
515DAT|1|1+5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153149
525DGF|1|1+5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33149
535DGV|1|1+5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13148
545JUP|1|B+5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53309
553JCT|1|1+3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058