Equivalence class NR_3.5_90506.48 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5TBW|1|1+ 5TBW|1|4 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 2 | 5TBW|1|AR+ 5TBW|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 3 | 4V88|1|A5+ 4V88|1|A8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 4 | 4V88|1|A1+ 4V88|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 5 | 7OSA|1|25S+ 7OSA|1|58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 6 | 5I4L|1|5+ 5I4L|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 7 | 5I4L|1|1+ 5I4L|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 8 | 5MEI|1|AR+ 5MEI|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 2017-06-28 |
| 9 | 5MEI|1|1+ 5MEI|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 2017-06-28 |
| 10 | 6HHQ|1|AR+ 6HHQ|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2019-02-20 |
| 11 | 6HHQ|1|1+ 6HHQ|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2019-02-20 |
| 12 | 5OBM|1|5+ 5OBM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 2017-12-13 |
| 13 | 5OBM|1|1+ 5OBM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 2017-12-13 |
| 14 | 5LYB|1|5+ 5LYB|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 15 | 5NDV|1|1+ 5NDV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2017-12-13 |
| 16 | 5ON6|1|1+ 5ON6|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 2018-02-28 |
| 17 | 5LYB|1|1+ 5LYB|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 18 | 5ON6|1|AR+ 5ON6|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 2018-02-28 |
| 19 | 7OSM|1|25S+ 7OSM|1|58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 20 | 5NDV|1|5+ 5NDV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2017-12-13 |
| 21 | 5TGM|1|1+ 5TGM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 22 | 5TGM|1|5+ 5TGM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 23 | 5DAT|1|5+ 5DAT|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 24 | 5DGV|1|5+ 5DGV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 25 | 5DAT|1|1+ 5DAT|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 26 | 5DGV|1|1+ 5DGV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 27 | 5DGE|1|5+ 5DGE|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 2017-01-25 |
| 28 | 5TGA|1|5+ 5TGA|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 29 | 5DGF|1|5+ 5DGF|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 30 | 5TGA|1|1+ 5TGA|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 31 | 5DGF|1|1+ 5DGF|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 32 | 5DGE|1|1+ 5DGE|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 2017-01-25 |
| 33 | 5DC3|1|5+ 5DC3|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 34 | 5DC3|1|1+ 5DC3|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 35 | 6T4Q|1|C1+ 6T4Q|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 2019-12-25 |
| 36 | 7MPJ|1|A1+ 7MPJ|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Stm1 bound vacant 80S structure isolated from nop1-D243A | Electron microscopy | 2.7 | 2022-05-11 |
| 37 | 6WOO|1|5+ 6WOO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 2020-09-23 |
| 38 | 6TB3|1|BQ+ 6TB3|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 2020-04-22 |
| 39 | 6SNT|1|1+ 6SNT|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 2020-03-04 |
| 40 | 7AZY|1|E+ 7AZY|1|G | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | Electron microscopy | 2.877 | 2021-05-19 |
| 41 | 4U4R|1|1+ 4U4R|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 42 | 4U4R|1|5+ 4U4R|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 43 | 4U3U|1|5+ 4U3U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 44 | 4U3U|1|1+ 4U3U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 45 | 7N8B|1|A1+ 7N8B|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S, 5.8S | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 2022-05-11 |
| 46 | 7MPI|1|A1+ 7MPI|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 2022-05-11 |
| 47 | 5T62|1|A+ 5T62|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S Ribosomal RNA, 5.8S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | Electron microscopy | 3.1 | 2017-02-08 |
| 48 | 4U3M|1|1+ 4U3M|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 49 | 6YLG|1|1+ 6YLG|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | Electron microscopy | 3 | 2020-07-29 |
| 50 | 4U4Q|1|5+ 4U4Q|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 51 | 4U3M|1|5+ 4U3M|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 52 | 4U4U|1|1+ 4U4U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 53 | 4U4Q|1|1+ 4U4Q|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 54 | 4U4U|1|5+ 4U4U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 55 | 4U52|1|5+ 4U52|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 56 | 4U52|1|1+ 4U52|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 57 | 7RR5|1|C1+ 7RR5|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 58 | 6Q8Y|1|BQ+ 6Q8Y|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 2019-03-13 |
| 59 | 7OHQ|1|1+ 7OHQ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae | Electron microscopy | 3.1 | 2021-11-03 |
| 60 | 6YLH|1|1+ 6YLH|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Rix1-Rea1 pre-60S particle - full composite structure | Electron microscopy | 3.1 | 2020-07-29 |
| 61 | 4U6F|1|1+ 4U6F|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 62 | 6T7T|1|C1+ 6T7T|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on poly(A) tract. | Electron microscopy | 3.1 | 2019-12-25 |
| 63 | 4U6F|1|5+ 4U6F|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 64 | 6QIK|1|A+ 6QIK|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.1 | 2019-06-26 |
| 65 | 7B7D|1|LA+ 7B7D|1|LC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 2021-03-10 |
| 66 | 6XIR|1|1+ 6XIR|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 35S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 2020-08-26 |
| 67 | 5M1J|1|14+ 5M1J|1|44 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 2017-01-18 |
| 68 | 4U4N|1|5+ 4U4N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 69 | 6TNU|1|BQ+ 6TNU|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 2020-04-22 |
| 70 | 4U4Z|1|5+ 4U4Z|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 71 | 4U4N|1|1+ 4U4N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 72 | 4U4Z|1|1+ 4U4Z|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 73 | 6RZZ|1|A+ 6RZZ|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.2 | 2019-06-26 |
| 74 | 6T7I|1|C1+ 6T7I|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 2019-12-25 |
| 75 | 7BT6|1|1+ 7BT6|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN5.8-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1) | Electron microscopy | 3.12 | 2020-10-28 |
| 76 | 7BTB|1|1+ 7BTB|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN5.8-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2) | Electron microscopy | 3.22 | 2020-10-28 |
| 77 | 4U3N|1|5+ 4U3N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 78 | 4U4Y|1|5+ 4U4Y|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 79 | 3JCT|1|1+ 3JCT|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 2016-06-01 |
| 80 | 4U3N|1|1+ 4U3N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 81 | 4U55|1|5+ 4U55|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 82 | 4U4Y|1|1+ 4U4Y|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 83 | 6S47|1|AA+ 6S47|1|AC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | Electron microscopy | 3.28 | 2019-07-24 |
| 84 | 4U51|1|5+ 4U51|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 85 | 4U51|1|1+ 4U51|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 86 | 4U55|1|1+ 4U55|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 87 | 4U50|1|5+ 4U50|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 88 | 6R87|1|1+ 6R87|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | Electron microscopy | 3.4 | 2019-06-26 |
| 89 | 5H4P|1|1+ 5H4P|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | Electron microscopy | 3.07 | 2017-01-25 |
| 90 | 6M62|1|1+ 6M62|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state. | Electron microscopy | 3.2 | 2020-08-26 |
| 91 | 4U50|1|1+ 4U50|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 92 | 6Z6K|1|C1+ 6Z6K|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | Electron microscopy | 3.4 | 2020-07-29 |
| 93 | 6Z6J|1|C1+ 6Z6J|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | Electron microscopy | 3.4 | 2020-07-29 |
| 94 | 6R86|1|1+ 6R86|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1-60S ribosomal subunit complex (post-state) | Electron microscopy | 3.4 | 2019-07-31 |
| 95 | 6RI5|1|A+ 6RI5|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S RNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.3 | 2019-06-26 |
| 96 | 7OF1|1|1+ 7OF1|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae | Electron microscopy | 3.1 | 2021-11-03 |
| 97 | 5JUP|1|B+ 5JUP|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 2016-10-05 |
| 98 | 6HD7|1|1+ 6HD7|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-NatA complex | Electron microscopy | 3.4 | 2018-12-19 |
| 99 | 6QT0|1|A+ 6QT0|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.4 | 2019-06-26 |
| 100 | 4U53|1|1+ 4U53|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 101 | 6N8M|1|A+ 6N8M|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 2019-03-13 |
| 102 | 6N8O|1|A+ 6N8O|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 2019-03-13 |
| 103 | 4U53|1|5+ 4U53|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 104 | 7OH3|1|1+ 7OH3|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae | Electron microscopy | 3.4 | 2021-11-03 |
| 105 | 6SV4|1|YQ+ 6SV4|1|YS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 106 | 6SV4|1|BQ+ 6SV4|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 107 | 6SV4|1|ZQ+ 6SV4|1|ZS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 108 | 5APO|1|5+ 5APO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | Electron microscopy | 3.41 | 2015-12-16 |
| 109 | 6QTZ|1|A+ 6QTZ|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.5 | 2019-06-26 |
| 110 | 6N8J|1|1+ 6N8J|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 2019-03-13 |
| 111 | 4U56|1|1+ 4U56|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 112 | 4U56|1|5+ 4U56|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 113 | 6ELZ|1|1+ 6ELZ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | Electron microscopy | 3.3 | 2017-12-27 |
| 114 | 7OHX|1|1+ 7OHX|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A | Electron microscopy | 3.3 | 2021-11-03 |
| 115 | 6EM3|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.2 | 2017-12-27 |
| 116 | 7OHW|1|1+ 7OHW|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B | Electron microscopy | 3.5 | 2021-11-03 |
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6EM3|1|1 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 3.2 | 1250 |
| 2 | 6WOO|1|5+6WOO|1|8 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 3271 |
| 3 | 5JUP|1|B+5JUP|1|C | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 3309 |
| 4 | 6R86|1|1+6R86|1|4 | Yeast Vms1-60S ribosomal subunit complex (post-state) | ELECTRON MICROSCOPY | 3.4 | 3260 |
| 5 | 6QT0|1|A+6QT0|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.4 | 3164 |
| 6 | 6XIR|1|1+6XIR|1|4 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | ELECTRON MICROSCOPY | 3.2 | 3113 |
| 7 | 6SV4|1|BQ+6SV4|1|BS | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 3127 |
| 8 | 6SV4|1|YQ+6SV4|1|YS | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 3127 |
| 9 | 6SV4|1|ZQ+6SV4|1|ZS | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 3127 |
| 10 | 5NDV|1|5+5NDV|1|8 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3087 |
| 11 | 5OBM|1|5+5OBM|1|8 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 3134 |
| 12 | 5DAT|1|5+5DAT|1|8 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 3169 |
| 13 | 5DGF|1|5+5DGF|1|8 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 3169 |
| 14 | 5DC3|1|5+5DC3|1|8 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 3169 |
| 15 | 5DGE|1|5+5DGE|1|8 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 3150 |
| 16 | 5DGV|1|5+5DGV|1|8 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 3149 |
| 17 | 5TGM|1|5+5TGM|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 3150 |
| 18 | 5TGA|1|5+5TGA|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 3152 |
| 19 | 5LYB|1|5+5LYB|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 3150 |
| 20 | 5I4L|1|5+5I4L|1|8 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3150 |
| 21 | 4U53|1|5+4U53|1|8 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3150 |
| 22 | 4U50|1|5+4U50|1|8 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3150 |
| 23 | 4U52|1|5+4U52|1|8 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 24 | 4U6F|1|5+4U6F|1|8 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3150 |
| 25 | 4U51|1|5+4U51|1|8 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3150 |
| 26 | 4U4U|1|5+4U4U|1|8 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 27 | 4U4Q|1|5+4U4Q|1|8 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 28 | 4U3M|1|5+4U3M|1|8 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3150 |
| 29 | 4U4Y|1|5+4U4Y|1|8 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3150 |
| 30 | 4U3N|1|5+4U3N|1|8 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3151 |
| 31 | 4U3U|1|5+4U3U|1|8 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3150 |
| 32 | 4U4R|1|5+4U4R|1|8 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3150 |
| 33 | 4V88|1|A5+4V88|1|A8 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3150 |
| 34 | 4U4N|1|5+4U4N|1|8 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3150 |
| 35 | 4U4Z|1|5+4U4Z|1|8 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3150 |
| 36 | 4U55|1|5+4U55|1|8 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3150 |
| 37 | 4U56|1|5+4U56|1|8 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 3150 |
| 38 | 5TBW|1|AR+5TBW|1|AT | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 39 | 6HHQ|1|AR+6HHQ|1|AT | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3147 |
| 40 | 5ON6|1|AR+5ON6|1|AT | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 41 | 5MEI|1|AR+5MEI|1|AT | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 3149 |
| 42 | 5NDV|1|1+5NDV|1|4 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3078 |
| 43 | 7B7D|1|LA+7B7D|1|LC | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | ELECTRON MICROSCOPY | 3.3 | 3223 |
| 44 | 5M1J|1|14+5M1J|1|44 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 3295 |
| 45 | 5OBM|1|1+5OBM|1|4 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.4 | 3100 |
| 46 | 5DAT|1|1+5DAT|1|4 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 3149 |
| 47 | 5DGF|1|1+5DGF|1|4 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 3149 |
| 48 | 5DGE|1|1+5DGE|1|4 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 3149 |
| 49 | 5DGV|1|1+5DGV|1|4 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 3148 |
| 50 | 5TGM|1|1+5TGM|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 3149 |
| 51 | 4U4Z|1|1+4U4Z|1|4 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 52 | 4U56|1|1+4U56|1|4 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 3149 |
| 53 | 5MEI|1|1+5MEI|1|4 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 3149 |
| 54 | 5ON6|1|1+5ON6|1|4 | Crystal structure of haemanthamine bound to the 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 55 | 4U52|1|1+4U52|1|4 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 56 | 4U50|1|1+4U50|1|4 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3149 |
| 57 | 4U53|1|1+4U53|1|4 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3149 |
| 58 | 4U6F|1|1+4U6F|1|4 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 59 | 4U3N|1|1+4U3N|1|4 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3150 |
| 60 | 5LYB|1|1+5LYB|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 3149 |
| 61 | 4V88|1|A1+4V88|1|A4 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3149 |
| 62 | 4U4R|1|1+4U4R|1|4 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3149 |
| 63 | 4U3U|1|1+4U3U|1|4 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3149 |
| 64 | 4U3M|1|1+4U3M|1|4 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 65 | 4U4Y|1|1+4U4Y|1|4 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3149 |
| 66 | 5DC3|1|1+5DC3|1|4 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 3149 |
| 67 | 5TBW|1|1+5TBW|1|4 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 68 | 4U4Q|1|1+4U4Q|1|4 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 69 | 4U4U|1|1+4U4U|1|4 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3149 |
| 70 | 4U51|1|1+4U51|1|4 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3149 |
| 71 | 4U55|1|1+4U55|1|4 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3149 |
| 72 | 4U4N|1|1+4U4N|1|4 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 73 | 5I4L|1|1+5I4L|1|4 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 74 | 5TGA|1|1+5TGA|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 3151 |
| 75 | 6HHQ|1|1+6HHQ|1|4 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3149 |
| 76 | 6S47|1|AA+6S47|1|AC | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | ELECTRON MICROSCOPY | 3.28 | 3149 |
| 77 | 6T7T|1|C1+6T7T|1|C3 | Structure of yeast 80S ribosome stalled on poly(A) tract. | ELECTRON MICROSCOPY | 3.1 | 3184 |
| 78 | 6T4Q|1|C1+6T4Q|1|C3 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 3184 |
| 79 | 6SNT|1|1+6SNT|1|3 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 3184 |
| 80 | 6T7I|1|C1+6T7I|1|C3 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 3184 |
| 81 | 6TB3|1|BQ+6TB3|1|BS | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 3223 |
| 82 | 7AZY|1|E+7AZY|1|G | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | ELECTRON MICROSCOPY | 2.877 | 3161 |
| 83 | 6Q8Y|1|BQ+6Q8Y|1|BS | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 3161 |
| 84 | 6TNU|1|BQ+6TNU|1|BS | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 3184 |
| 85 | 7N8B|1|A1+7N8B|1|A4 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 3115 |
| 86 | 7MPJ|1|A1+7MPJ|1|A4 | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 3067 |
| 87 | 7MPI|1|A1+7MPI|1|A4 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | ELECTRON MICROSCOPY | 3.05 | 3096 |
| 88 | 5APO|1|5+5APO|1|8 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.41 | 3092 |
| 89 | 6R87|1|1+6R87|1|4 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | ELECTRON MICROSCOPY | 3.4 | 3316 |
| 90 | 6Z6J|1|C1+6Z6J|1|C3 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | ELECTRON MICROSCOPY | 3.4 | 3127 |
| 91 | 6Z6K|1|C1+6Z6K|1|C3 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3.4 | 3127 |
| 92 | 7OSM|1|25S+7OSM|1|58S | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 3162 |
| 93 | 7OSA|1|25S+7OSA|1|58S | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 3180 |
| 94 | 6RI5|1|A+6RI5|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.3 | 3147 |
| 95 | 6QTZ|1|A+6QTZ|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.5 | 3146 |
| 96 | 6N8O|1|A+6N8O|1|C | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 3201 |
| 97 | 7RR5|1|C1+7RR5|1|C3 | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 3221 |
| 98 | 6HD7|1|1+6HD7|1|4 | Cryo-EM structure of the ribosome-NatA complex | ELECTRON MICROSCOPY | 3.4 | 3335 |
| 99 | 5T62|1|A+5T62|1|C | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | ELECTRON MICROSCOPY | 3.1 | 3200 |
| 100 | 5H4P|1|1+5H4P|1|4 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | ELECTRON MICROSCOPY | 3.07 | 3091 |
| 101 | 6RZZ|1|A+6RZZ|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.2 | 3146 |
| 102 | 6QIK|1|A+6QIK|1|y | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | ELECTRON MICROSCOPY | 3.1 | 3146 |
| 103 | 6N8M|1|A+6N8M|1|C | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 3203 |
| 104 | 6YLH|1|1+6YLH|1|2 | Rix1-Rea1 pre-60S particle - full composite structure | ELECTRON MICROSCOPY | 3.1 | 3039 |
| 105 | 6YLG|1|1+6YLG|1|2 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | ELECTRON MICROSCOPY | 3 | 3039 |
| 106 | 6N8J|1|1+6N8J|1|3 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | ELECTRON MICROSCOPY | 3.5 | 3047 |
| 107 | 7OF1|1|1+7OF1|1|2 | Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae | ELECTRON MICROSCOPY | 3.1 | 2787 |
| 108 | 7OHQ|1|1+7OHQ|1|2 | Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae | ELECTRON MICROSCOPY | 3.1 | 3053 |
| 109 | 7OH3|1|1+7OH3|1|2 | Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae | ELECTRON MICROSCOPY | 3.4 | 3013 |
| 110 | 3JCT|1|1+3JCT|1|2 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 3058 |
| 111 | 7BTB|1|1+7BTB|1|2 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2) | ELECTRON MICROSCOPY | 3.22 | 3058 |
| 112 | 6M62|1|1+6M62|1|2 | Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state. | ELECTRON MICROSCOPY | 3.2 | 2972 |
| 113 | 7BT6|1|1+7BT6|1|2 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1) | ELECTRON MICROSCOPY | 3.12 | 2962 |
| 114 | 6ELZ|1|1+6ELZ|1|2 | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | ELECTRON MICROSCOPY | 3.3 | 2457 |
| 115 | 7OHX|1|1+7OHX|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A | ELECTRON MICROSCOPY | 3.3 | 1561 |
| 116 | 7OHW|1|1+7OHW|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B | ELECTRON MICROSCOPY | 3.5 | 1639 |
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