Equivalence class NR_3.5_90633.17 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 4WF9|1|X (rep) | 23S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
2 | 4WFA|1|X | 23S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2015-10-21 |
3 | 4WFB|1|X | 23S rRNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
4 | 5NRG|1|X | 23S ribosomal RNA | Staphylococcus aureus | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2017-08-09 |
5 | 6S0Z|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2019-08-21 |
6 | 6HMA|1|A | 23S ribosomal RNA | Staphylococcus aureus | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2018-11-14 |
7 | 6S0X|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2019-08-21 |
8 | 5NGM|1|AA | 23S Ribosomal RNA | Staphylococcus aureus | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2017-10-04 |
9 | 6YEF|1|A | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2021-01-27 |
10 | 6WQN|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | ELECTRON MICROSCOPY | 2.9 | 2020-06-03 |
11 | 6WQQ|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid | ELECTRON MICROSCOPY | 3.1 | 2020-06-03 |
12 | 6WRU|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid | ELECTRON MICROSCOPY | 3.1 | 2020-06-03 |
13 | 6WRS|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid | ELECTRON MICROSCOPY | 3.2 | 2020-06-03 |
14 | 6DDG|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 2019-03-20 |
15 | 6DDD|1|1 | 23S rRNA | Staphylococcus aureus | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 2019-03-20 |
16 | 6S12|1|A | 23S ribosomal RNA | Staphylococcus aureus | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2019-08-21 |
17 | 6SJ6|1|A | 23S ribosomal RNA | Staphylococcus aureus | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2020-04-08 |
Release history
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_3.5_90633.17 | NR_3.5_90633.18 | 3.177 | (17) 6SJ6|1|A, 5NGM|1|AA, 6S12|1|A, 4WFB|1|X, 6S0Z|1|A, 4WFA|1|X, 6S0X|1|A, 6YEF|1|A, 4WF9|1|X, 6HMA|1|A, 6WRU|1|1, 6DDG|1|1, 6WRS|1|1, 6DDD|1|1, 6WQQ|1|1, 6WQN|1|1, 5NRG|1|X | (0) | (2) 7NHL|1|A, 7NHM|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 6SJ6|1|A | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2585 |
2 | 6HMA|1|A | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2831 |
3 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 |
4 | 4WFB|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2707 |
5 | 4WF9|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2712 |
6 | 4WFA|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2711 |
7 | 5NRG|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2711 |
8 | 6DDG|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 2646 |
9 | 6DDD|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 2646 |
10 | 6YEF|1|A | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2875 |
11 | 6WRU|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid | ELECTRON MICROSCOPY | 3.1 | 2665 |
12 | 6WQQ|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid | ELECTRON MICROSCOPY | 3.1 | 2698 |
13 | 6WRS|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid | ELECTRON MICROSCOPY | 3.2 | 2698 |
14 | 6WQN|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | ELECTRON MICROSCOPY | 2.9 | 2687 |
15 | 6S12|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2905 |
16 | 6S0Z|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2905 |
17 | 6S0X|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2905 |