Equivalence class NR_3.5_90633.21 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|X (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2015-10-21 |
| 2 | 4WFA|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2015-10-21 |
| 3 | 4WFB|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2015-10-21 |
| 4 | 5NRG|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2017-08-09 |
| 5 | 6S0Z|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.3 | 2019-08-21 |
| 6 | 7ASM|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation at 37C | Electron microscopy | 2.48 | 2021-11-17 |
| 7 | 6HMA|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | Electron microscopy | 2.65 | 2018-11-14 |
| 8 | 6S0X|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2019-08-21 |
| 9 | 5NGM|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 10 | 7NHL|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 11 | 7ASP|1|Y | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 70S after 50 minutes incubation at 37C | Electron microscopy | 2.86 | 2021-11-17 |
| 12 | 7NHM|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 13 | 7P48|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus ribosome in complex with Sal(B) | Electron microscopy | 2.9 | 2022-02-02 |
| 14 | 7ASN|1|A | Large subunit ribosomal RNA | 23S | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation a 37C | Electron microscopy | 2.73 | 2021-11-17 |
| 15 | 6YEF|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | Electron microscopy | 3.2 | 2021-01-27 |
| 16 | 7TTW|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | 50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance | Electron microscopy | 2.9 | 2022-07-06 |
| 17 | 6WQN|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | Electron microscopy | 2.9 | 2020-06-03 |
| 18 | 7ASO|1|Y | Large subunit ribosomal RNA | 23S | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 70S after 30 minutes incubation at 37C | Electron microscopy | 3.11 | 2021-11-17 |
| 19 | 7TTU|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | 50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300) | Electron microscopy | 3 | 2022-07-06 |
| 20 | 6WQQ|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid | Electron microscopy | 3.1 | 2020-06-03 |
| 21 | 6WRU|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid | Electron microscopy | 3.1 | 2020-06-03 |
| 22 | 6WRS|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid | Electron microscopy | 3.2 | 2020-06-03 |
| 23 | 6DDG|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | Electron microscopy | 3.1 | 2019-03-20 |
| 24 | 6DDD|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | Electron microscopy | 3.1 | 2019-03-20 |
| 25 | 6S12|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.2 | 2019-08-21 |
| 26 | 6SJ6|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | Electron microscopy | 3.23 | 2020-04-08 |
Release history
| Release | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_90633.21 | NR_3.5_90633.20 | 3.238 | (24) 4WFA|1|X, 7ASM|1|A, 4WF9|1|X, 6YEF|1|A, 6WRU|1|1, 6WRS|1|1, 6WQQ|1|1, 6WQN|1|1, 6SJ6|1|A, 6S12|1|A, 6S0Z|1|A, 6S0X|1|A, 6HMA|1|A, 7P48|1|A, 6DDG|1|1, 7NHM|1|A, 6DDD|1|1, 7NHL|1|A, 5NRG|1|X, 7ASP|1|Y, 5NGM|1|AA, 7ASO|1|Y, 4WFB|1|X, 7ASN|1|A | (2) 7TTU|1|1, 7TTW|1|1 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7ASP|1|Y | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 2723 |
| 2 | 6S12|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2905 |
| 3 | 6S0Z|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2905 |
| 4 | 6S0X|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2905 |
| 5 | 7ASO|1|Y | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 2720 |
| 6 | 6WQN|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | ELECTRON MICROSCOPY | 2.9 | 2687 |
| 7 | 7TTU|1|1 | 50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300) | ELECTRON MICROSCOPY | 3 | 2684 |
| 8 | 7TTW|1|1 | 50S ribosomal subunit from Staphylococcus aureus containing double mutation in uL3 imparting linezolid resistance | ELECTRON MICROSCOPY | 2.9 | 2690 |
| 9 | 6WRS|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid | ELECTRON MICROSCOPY | 3.2 | 2698 |
| 10 | 6WQQ|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid | ELECTRON MICROSCOPY | 3.1 | 2698 |
| 11 | 6WRU|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid | ELECTRON MICROSCOPY | 3.1 | 2665 |
| 12 | 7P48|1|A | Staphylococcus aureus ribosome in complex with Sal(B) | ELECTRON MICROSCOPY | 2.9 | 2661 |
| 13 | 6YEF|1|A | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2875 |
| 14 | 7NHM|1|A | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2824 |
| 15 | 7NHL|1|A | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2914 |
| 16 | 6DDD|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 2646 |
| 17 | 6DDG|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 2646 |
| 18 | 5NRG|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2711 |
| 19 | 4WFA|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2711 |
| 20 | 4WF9|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2712 |
| 21 | 4WFB|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2707 |
| 22 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 |
| 23 | 7ASM|1|A | Staphylococcus aureus 50S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.48 | 2831 |
| 24 | 6HMA|1|A | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2831 |
| 25 | 6SJ6|1|A | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2585 |
| 26 | 7ASN|1|A | Staphylococcus aureus 50S after 30 minutes incubation a 37C | ELECTRON MICROSCOPY | 2.73 | 2739 |