Equivalence class NR_3.5_90840.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7MDL|1|E (rep) | Selenocysteine transfer RNA | RNA (90-MER) | synthetic construct | Synthetic | RF01852 | High-resolution crystal structure of human SepSecS-tRNASec complex | X-ray diffraction | 2.32 | 2022-11-09 |
| 2 | 4ZDO|1|E | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-ray diffraction | 2.65 | 2016-04-20 |
| 3 | 3A3A|1|A | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | Crystal structure of human selenocystine tRNA | X-ray diffraction | 3.1 | 2009-08-11 |
| 4 | 4ZDP|1|E | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-ray diffraction | 2.7 | 2016-04-20 |
| 5 | 4RQF|1|C | Selenocysteine transfer RNA | selenocysteine tRNA | Homo sapiens | Eukarya | RF01852 | human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec | X-ray diffraction | 3.5 | 2015-11-04 |
| 6 | 3HL2|1|E | Selenocysteine transfer RNA | tRNASec | Homo sapiens | Eukarya | RF01852 | The crystal structure of the human SepSecS-tRNASec complex | X-ray diffraction | 2.81 | 2009-10-06 |
| 7 | 7ZJW|1|F | Selenocysteine transfer RNA | human Ser-tRNA-Sec | Homo sapiens | Eukarya | RF01852 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | Electron microscopy | 2.8 | 2022-10-19 |
Release history
| Release | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7MDL|1|E | High-resolution crystal structure of human SepSecS-tRNASec complex | X-RAY DIFFRACTION | 2.32 | 168 |
| 2 | 4ZDO|1|E | The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-RAY DIFFRACTION | 2.65 | 150 |
| 3 | 4ZDP|1|E | The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec) | X-RAY DIFFRACTION | 2.7 | 148 |
| 4 | 3HL2|1|E | The crystal structure of the human SepSecS-tRNASec complex | X-RAY DIFFRACTION | 2.81 | 164 |
| 5 | 3A3A|1|A | Crystal structure of human selenocystine tRNA | X-RAY DIFFRACTION | 3.1 | 86 |
| 6 | 4RQF|1|C | human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec | X-RAY DIFFRACTION | 3.5 | 63 |
| 7 | 7ZJW|1|F | Rabbit 80S ribosome as it decodes the Sec-UGA codon | ELECTRON MICROSCOPY | 2.8 | 90 |