Equivalence class NR_3.5_92081.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FQ5|1|A (rep) | SGRNA | synthetic construct | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-ray diffraction | 2.14 | 2016-03-23 | |||
| 2 | 5FW2|1|A | SGRNA | synthetic construct | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.68 | 2016-06-15 | |||
| 3 | 4UN4|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 2014-07-23 | |||
| 4 | 6AEG|1|A | RNA (95-MER) | Streptococcus pyogenes | Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM) | X-ray diffraction | 2.7 | 2019-03-27 | |||
| 5 | 4UN5|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 2014-07-23 | |||
| 6 | 5FW3|1|A | SGRNA | synthetic construct | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-ray diffraction | 2.7 | 2016-06-15 | |||
| 7 | 4UN3|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target | X-ray diffraction | 2.59 | 2014-07-23 | |||
| 8 | 5FW1|1|A | SGRNA | synthetic construct | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.5 | 2016-04-20 | |||
| 9 | 6AEB|1|A | RNA (95-MER) | Streptococcus pyogenes | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-ray diffraction | 3 | 2019-03-27 | |||
| 10 | 6AEB|1|E | RNA (95-MER) | Streptococcus pyogenes | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-ray diffraction | 3 | 2019-03-27 |
Release history
| Release | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6AEB|1|E | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-RAY DIFFRACTION | 3 | 95 |
| 2 | 6AEB|1|A | Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM) | X-RAY DIFFRACTION | 3 | 95 |
| 3 | 6AEG|1|A | Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM) | X-RAY DIFFRACTION | 2.7 | 95 |
| 4 | 4UN3|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target | X-RAY DIFFRACTION | 2.59 | 81 |
| 5 | 5FW2|1|A | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.68 | 81 |
| 6 | 5FW3|1|A | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-RAY DIFFRACTION | 2.7 | 81 |
| 7 | 5FW1|1|A | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.5 | 81 |
| 8 | 4UN4|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 82 |
| 9 | 5FQ5|1|A | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-RAY DIFFRACTION | 2.14 | 83 |
| 10 | 4UN5|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 82 |