Equivalence class NR_3.5_93493.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7R81|1|A1+ 7R81|1|C1 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Neurospora crassa | Eukarya | RF02543 + RF00002 | Structure of the translating Neurospora crassa ribosome arrested by cycloheximide | Electron microscopy | 2.7 | 2021-12-01 |
| 2 | 7OLC|1|1+ 7OLC|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Chaetomium thermophilum var. thermophilum DSM 1495 | Eukarya | RF02543 + RF00002 | Thermophilic eukaryotic 80S ribosome at idle POST state | Electron microscopy | 2.9 | 2022-01-26 |
| 3 | 8IA0|1|C1+ 8IA0|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (319-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 | Electron microscopy | 2.7 | 2023-05-17 |
| 4 | 7OLD|1|1+ 7OLD|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Chaetomium thermophilum var. thermophilum DSM 1495 | Eukarya | RF02543 + RF00002 | Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state | Electron microscopy | 3 | 2022-01-26 |
| 5 | 8I9Z|1|C1+ 8I9Z|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (319-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 | Electron microscopy | 2.7 | 2023-05-17 |
| 6 | 7Z3N|1|1+ 7Z3N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation | Electron microscopy | 3.2 | 2023-04-12 |
| 7 | 7Z3O|1|1+ 7Z3O|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation | Electron microscopy | 3.3 | 2023-04-12 |
| 8 | 8I9X|1|C1+ 8I9X|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (319-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 | Electron microscopy | 2.8 | 2023-05-17 |
| 9 | 8I9Y|1|C1+ 8I9Y|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (319-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 | Electron microscopy | 3.1 | 2023-05-17 |
| 10 | 8I9W|1|C1+ 8I9W|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (319-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 | Electron microscopy | 3.1 | 2023-05-17 |
| 11 | 8I9V|1|C1+ 8I9V|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (256-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 | Electron microscopy | 3.1 | 2023-05-17 |
| 12 | 8I9R|1|C1+ 8I9R|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (256-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP | Electron microscopy | 3.1 | 2023-05-17 |
| 13 | 8I9P|1|C1+ 8I9P|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (306-MER), RNA (3341-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 | Electron microscopy | 3 | 2023-05-17 |
Release history
| Release | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_93493.1 | NR_3.5_84627.1 | 3.283 | (5) 7OLC|1|1+7OLC|1|4, 7OLD|1|1+7OLD|1|4, 7R81|1|A1+7R81|1|C1, 7Z3N|1|1+7Z3N|1|4, 7Z3O|1|1+7Z3O|1|4 | (8) 8I9P|1|C1+8I9P|1|C2, 8I9R|1|C1+8I9R|1|C2, 8I9V|1|C1+8I9V|1|C2, 8I9W|1|C1+8I9W|1|C2, 8I9X|1|C1+8I9X|1|C2, 8I9Y|1|C1+8I9Y|1|C2, 8I9Z|1|C1+8I9Z|1|C2, 8IA0|1|C1+8IA0|1|C2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_93493.1 | NR_3.5_93493.2 | 3.309 | (13) 7OLC|1|1+7OLC|1|4, 7OLD|1|1+7OLD|1|4, 7R81|1|A1+7R81|1|C1, 7Z3N|1|1+7Z3N|1|4, 7Z3O|1|1+7Z3O|1|4, 8I9P|1|C1+8I9P|1|C2, 8I9R|1|C1+8I9R|1|C2, 8I9V|1|C1+8I9V|1|C2, 8I9W|1|C1+8I9W|1|C2, 8I9X|1|C1+8I9X|1|C2, 8I9Y|1|C1+8I9Y|1|C2, 8I9Z|1|C1+8I9Z|1|C2, 8IA0|1|C1+8IA0|1|C2 | (0) | (7) 8PV1|1|C1+8PV1|1|C2, 8PV2|1|C1+8PV2|1|C2, 8PV3|1|C1+8PV3|1|C2, 8PV4|1|C1+8PV4|1|C2, 8PV5|1|C1+8PV5|1|C2, 8PV6|1|C1+8PV6|1|C2, 8PV7|1|C1+8PV7|1|C2 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7OLD|1|1+ 7OLD|1|4 | Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state | ELECTRON MICROSCOPY | 3 | 3192 | |
| 2 | 7OLC|1|1+ 7OLC|1|4 | Thermophilic eukaryotic 80S ribosome at idle POST state | ELECTRON MICROSCOPY | 2.9 | 3190 | |
| 3 | 7Z3O|1|1+ 7Z3O|1|4 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation | ELECTRON MICROSCOPY | 3.3 | 3190 | |
| 4 | 7Z3N|1|1+ 7Z3N|1|4 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation | ELECTRON MICROSCOPY | 3.2 | 3190 | |
| 5 | 7R81|1|A1+ 7R81|1|C1 | Structure of the translating Neurospora crassa ribosome arrested by cycloheximide | ELECTRON MICROSCOPY | 2.7 | 3123 | |
| 6 | 8I9Z|1|C1+ 8I9Z|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 | ELECTRON MICROSCOPY | 2.7 | 2787 | |
| 7 | 8IA0|1|C1+ 8IA0|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 | ELECTRON MICROSCOPY | 2.7 | 2928 | |
| 8 | 8I9Y|1|C1+ 8I9Y|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 | ELECTRON MICROSCOPY | 3.1 | 2609 | |
| 9 | 8I9X|1|C1+ 8I9X|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 | ELECTRON MICROSCOPY | 2.8 | 2658 | |
| 10 | 8I9W|1|C1+ 8I9W|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 | ELECTRON MICROSCOPY | 3.1 | 2163 | |
| 11 | 8I9V|1|C1+ 8I9V|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 | ELECTRON MICROSCOPY | 3.1 | 2152 | |
| 12 | 8I9P|1|C1+ 8I9P|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 | ELECTRON MICROSCOPY | 3 | 1307 | |
| 13 | 8I9R|1|C1+ 8I9R|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP | ELECTRON MICROSCOPY | 3.1 | 2045 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: