NR_3.5_93855.13

Members (25)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7QI4\|1\|AA (rep)	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome at 2.2 A resolution	Electron microscopy	2.21	2022-07-13
2	7P2E\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	Electron microscopy	2.4	2022-07-27
3	6ZM6\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	2021-01-13
4	7PNX\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a	Electron microscopy	2.76	2022-06-15
5	8CSS\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State D)	Electron microscopy	2.36	2022-12-14
6	6ZM5\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	2021-01-13
7	7QI6\|1\|AA	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	Electron microscopy	2.98	2023-05-17
8	6VMI\|1\|AA	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	2020-08-05
9	7PO3\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome small subunit	Electron microscopy	2.92	2022-06-15
10	7PO1\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Initiation complex of human mitochondrial ribosome small subunit with IF3	Electron microscopy	2.92	2022-06-15
11	7PO0\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3	Electron microscopy	2.9	2022-06-15
12	6VLZ\|1\|AA	Small subunit ribosomal RNA	12s rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	2020-08-05
13	6RW4\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	Electron microscopy	2.97	2020-06-03
14	8CSR\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State C)	Electron microscopy	2.54	2022-12-14
15	7PO2\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	Electron microscopy	3.09	2022-06-15
16	7PNY\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b	Electron microscopy	3.06	2022-06-15
17	7PNZ\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c	Electron microscopy	3.09	2022-06-15
18	6RW5\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	Electron microscopy	3.14	2020-06-03
19	8CST\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State E)	Electron microscopy	2.85	2022-12-14
20	8CSQ\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State B)	Electron microscopy	2.54	2022-12-14
21	8CSU\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State C*)	Electron microscopy	3.03	2022-12-14
22	7L08\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	2021-05-12
23	8CSP\|1\|A	Small subunit ribosomal RNA	12S mitochondrial rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial small subunit assembly intermediate (State A)	Electron microscopy	2.66	2022-12-14
24	6ZSC\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	2020-09-16
25	3J9M\|1\|AA	Small subunit ribosomal RNA	12S rRNA	Homo sapiens	Mitochondria	RF00177	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	2015-04-15

Release history

Release	3.283	3.284	3.285	3.286
Date	2023-05-17	2023-05-24	2023-05-31	2023-06-07

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_93855.13	NR_3.5_93855.12	3.283	(24) 7PNX\|1\|A, 7P2E\|1\|A, 7L08\|1\|AA, 6ZSC\|1\|AA, 6ZM6\|1\|AA, 6ZM5\|1\|AA, 6VMI\|1\|AA, 6VLZ\|1\|AA, 6RW5\|1\|A, 6RW4\|1\|A, 3J9M\|1\|AA, 8CSU\|1\|A, 8CST\|1\|A, 8CSS\|1\|A, 8CSR\|1\|A, 8CSQ\|1\|A, 8CSP\|1\|A, 7QI4\|1\|AA, 7PO3\|1\|A, 7PO2\|1\|A, 7PO1\|1\|A, 7PO0\|1\|A, 7PNZ\|1\|A, 7PNY\|1\|A	(1) 7QI6\|1\|AA	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_93855.13	NR_3.5_93855.14	3.287	(25) 7PNY\|1\|A, 8CSP\|1\|A, 6VLZ\|1\|AA, 7PNX\|1\|A, 7QI6\|1\|AA, 6RW5\|1\|A, 7P2E\|1\|A, 7QI4\|1\|AA, 6RW4\|1\|A, 7L08\|1\|AA, 7PO3\|1\|A, 8CSU\|1\|A, 3J9M\|1\|AA, 6ZSC\|1\|AA, 7PO2\|1\|A, 8CST\|1\|A, 6ZM6\|1\|AA, 7PO1\|1\|A, 8CSS\|1\|A, 6ZM5\|1\|AA, 7PO0\|1\|A, 8CSR\|1\|A, 7PNZ\|1\|A, 8CSQ\|1\|A, 6VMI\|1\|AA	(0)	(2) 8OIR\|1\|AA, 8OIS\|1\|AA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	7PNY\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b	ELECTRON MICROSCOPY	3.06	946
2	6VLZ\|1\|AA	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	944
3	6VMI\|1\|AA	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	944
4	7L08\|1\|AA	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	944
5	3J9M\|1\|AA	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	923
6	6ZSC\|1\|AA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	927
7	6ZM5\|1\|AA	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	954
8	6ZM6\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	954
9	7QI4\|1\|AA	Human mitochondrial ribosome at 2.2 A resolution	ELECTRON MICROSCOPY	2.21	949
10	7QI6\|1\|AA	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	ELECTRON MICROSCOPY	2.98	949
11	7PO2\|1\|A	Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA	ELECTRON MICROSCOPY	3.09	950
12	7PO3\|1\|A	Human mitochondrial ribosome small subunit	ELECTRON MICROSCOPY	2.92	950
13	7PO1\|1\|A	Initiation complex of human mitochondrial ribosome small subunit with IF3	ELECTRON MICROSCOPY	2.92	950
14	6RW5\|1\|A	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3	ELECTRON MICROSCOPY	3.14	950
15	6RW4\|1\|A	Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3	ELECTRON MICROSCOPY	2.97	950
16	7P2E\|1\|A	Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin	ELECTRON MICROSCOPY	2.4	959
17	7PNZ\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c	ELECTRON MICROSCOPY	3.09	946
18	7PO0\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3	ELECTRON MICROSCOPY	2.9	946
19	7PNX\|1\|A	Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a	ELECTRON MICROSCOPY	2.76	946
20	8CST\|1\|A	Human mitochondrial small subunit assembly intermediate (State E)	ELECTRON MICROSCOPY	2.85	886
21	8CSS\|1\|A	Human mitochondrial small subunit assembly intermediate (State D)	ELECTRON MICROSCOPY	2.36	844
22	8CSR\|1\|A	Human mitochondrial small subunit assembly intermediate (State C)	ELECTRON MICROSCOPY	2.54	853
23	8CSU\|1\|A	Human mitochondrial small subunit assembly intermediate (State C*)	ELECTRON MICROSCOPY	3.03	881
24	8CSQ\|1\|A	Human mitochondrial small subunit assembly intermediate (State B)	ELECTRON MICROSCOPY	2.54	802
25	8CSP\|1\|A	Human mitochondrial small subunit assembly intermediate (State A)	ELECTRON MICROSCOPY	2.66	737

Equivalence class NR_3.5_93855.13 Obsolete

Release history

Parents

Children