Equivalence class NR_3.5_97435.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TPQ|1|V (rep) | 5S ribosomal RNA | pre-5S rRNA | Bacillus subtilis | Bacteria | RF00001 | RNase M5 bound to 50S ribosome with precursor 5S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 2 | 7AQC|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2020-11-25 |
| 3 | 7AQD|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00001 | Structure of the bacterial RQC complex (Translocating State) | Electron microscopy | 3.1 | 2020-11-25 |
| 4 | 6TNN|1|V | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis | Bacteria | RF00001 | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 5 | 6HA1|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Bacillus subtilis | Bacteria | RF00001 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 6 | 6HA8|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis | Bacteria | RF00001 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | Electron microscopy | 3.5 | 2018-08-29 |
| 7 | 6PPF|1|B | 5S ribosomal RNA | 5S rRNA | Bacillus subtilis | Bacteria | RF00001 | Bacterial 45SRbgA ribosomal particle class B | Electron microscopy | 3.4 | 2019-09-18 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6HA1|1|B | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 112 |
| 2 | 6HA8|1|B | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 112 |
| 3 | 7AQD|1|B | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 112 |
| 4 | 7AQC|1|B | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 112 |
| 5 | 6TPQ|1|V | RNase M5 bound to 50S ribosome with precursor 5S rRNA | ELECTRON MICROSCOPY | 3.07 | 123 |
| 6 | 6TNN|1|V | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | ELECTRON MICROSCOPY | 3.07 | 116 |
| 7 | 6PPF|1|B | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 112 |