Equivalence class NR_3.5_99632.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6FYY|1|1 (rep) | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | Electron microscopy | 3.02 | 2018-12-05 |
| 2 | 6FYX|1|1 | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | Electron microscopy | 3.5 | 2018-12-05 |
| 3 | 1YFG|1|A | Transfer RNA | YEAST INITIATOR TRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | YEAST INITIATOR TRNA | X-ray diffraction | 3 | 1997-09-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_99632.5 | NR_3.5_99632.4 | 3.85 | (3) 1YFG|1|A, 6FYX|1|1, 6FYY|1|1 | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_99632.5 | NR_3.5_46777.1 | 3.98 | (1) 1YFG|1|A | (2) 6FYX|1|1, 6FYY|1|1 | (0) |
| NR_3.5_99632.5 | NR_3.5_99632.6 | 3.98 | (2) 6FYY|1|1, 6FYX|1|1 | (1) 1YFG|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6FYX|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 64 |
| 2 | 6FYY|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 64 |
| 3 | 1YFG|1|A | YEAST INITIATOR TRNA | X-RAY DIFFRACTION | 3 | 64 |