NR_4.0_00834.4

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#	IFE	Standardized name	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	1VS6\|B (rep)					Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.	X-ray diffraction	3.46	2006-09-26
2	1VS8\|B					Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.	X-ray diffraction	3.46	2006-09-26
3	1VT2\|A					Crystal structure of the E. coli ribosome bound to CEM-101. This file contains the 50S subunit of the second 70S ribosome.	X-ray diffraction	3.3	2010-10-06
4	2AW4\|B					Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.46	2005-11-08
5	2AWB\|B					Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.46	2005-11-08
6	2GYA\|0					Structure of the 50S subunit of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056	Electron microscopy	15	2006-09-26
7	2GYC\|0					Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143	Electron microscopy	15	2006-09-26
8	2I2T\|B					Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.	X-ray diffraction	3.22	2006-10-24
9	2I2V\|B					Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.	X-ray diffraction	3.22	2006-10-24
10	2J28\|B	Large subunit ribosomal RNA	Escherichia coli	Bacteria	RF02541	MODEL OF E. COLI SRP BOUND TO 70S RNCS	Electron microscopy	9.5	2006-11-08
11	2QAM\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 50S subunit of the first 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.21	2007-09-25
12	2QAO\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 50S subunit of the second 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.21	2007-09-25
13	2QBA\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 50S subunit of the first 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.54	2007-09-25
14	2QBC\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 50S subunit of the second 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.54	2007-09-25
15	2QBE\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the first 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.3	2007-09-25
16	2QBG\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	3.3	2007-09-25
17	2QBI\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 50S subunit of the first 70S ribosome, with gentamicin and RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	4	2007-09-25
18	2QBK\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with gentamicin and RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	4	2007-09-25
19	2QOV\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. This file contains the 50S subunit of the first 70S ribosome. The entire crystal structure contains two 70S ribosomes.	X-ray diffraction	3.93	2007-08-14
20	2QOX\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes.	X-ray diffraction	3.93	2007-08-14
21	2QOZ\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 50S subunit of the first 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes.	X-ray diffraction	3.5	2007-08-14
22	2QP1\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 50S subunit of the second 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes.	X-ray diffraction	3.5	2007-08-14
23	2VHM\|B					Structure of PDF binding helix in complex with the ribosome (part 1 of 4)	X-ray diffraction	3.74	2008-02-26
24	2VHN\|B					Structure of PDF binding helix in complex with the ribosome. (part 2 of 4)	X-ray diffraction	3.74	2008-02-26
25	2WWQ\|B					E.COLI 70S RIBOSOME STALLED DURING TRANSLATION OF TNAC LEADER PEPTIDE. THIS FILE CONTAINS THE 50S, THE P-SITE TRNA AND THE TNAC LEADER PEPTIDE (PART 2 OF 2).	Electron microscopy	5.8	2010-04-14
26	2Z4L\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). This file contains the 50S subunit of the first 70S ribosome, with paromomycin and RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	4.45	2007-09-25
27	2Z4N\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with paromomycin and RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.	X-ray diffraction	4.45	2007-09-25
28	3BBX\|B	Large subunit ribosomal RNA	Escherichia coli	Bacteria	RF02541	The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex	Electron microscopy	10	2008-10-21
29	3DF2\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. This file contains the 50S subunit of the first 70S ribosome. The entire crystal structure contains two 70S ribosomes.	X-ray diffraction	3.5	2008-08-19
30	3DF4\|B					Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes.	X-ray diffraction	3.5	2008-08-19
31	3E1B\|B					Structure of the 50S subunit of E. coli ribosome in Pre-accommodation state	Electron microscopy	9	2009-08-18
32	3E1D\|B					Structure of the 50S subunit of E. coli ribosome in Post-accommodation state	Electron microscopy	9	2009-08-18
33	3FIK\|B					Ternary complex-bound E.coli 70S ribosome. This entry consists of the 50S subunit.	Electron microscopy	6.7	2009-02-24
34	3I1N\|A					Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2009-09-01
35	3I1P\|A					Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2009-09-01
36	3I1R\|A					Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.81	2009-09-01
37	3I1T\|A					Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.81	2009-09-01
38	3I20\|A					Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.71	2009-09-01
39	3I22\|A					Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.71	2009-09-01
40	3IZT\|B					Structural insights into cognate vs. near-cognate discrimination during decoding. This entry contains the large subunit of a ribosome programmed with a near-cognate codon.	Electron microscopy	13.2	2011-03-23
41	3IZU\|B					Structural insights into cognate vs. near-cognate discrimination during decoding. This entry contains the large subunit of a ribosome programmed with a cognate codon	Electron microscopy	8.25	2011-03-23
42	3J01\|8					Structure of the ribosome-SecYE complex in the membrane environment	Electron microscopy	7.1	2011-04-20
43	3KCR\|8					Ribosome-SecY complex. This entry 3KCR contains 50S ribosomal subnit. The 30S ribosomal subunit can be found in PDB entry 3KC4	Electron microscopy	9.6	2010-03-02
44	3OAS\|A					Crystal structure of the E. coli ribosome bound to telithromycin. This file contains the 50S subunit of the second 70S ribosome.	X-ray diffraction	3.25	2010-12-15
45	3OAT\|A					Crystal structure of the E. coli ribosome bound to telithromycin. This file contains the 50S subunit of the first 70S ribosome with telithromycin bound.	X-ray diffraction	3.25	2010-12-15
46	3OFC\|A					Crystal structure of the E. coli ribosome bound to chloramphenicol. This file contains the 50S subunit of the first 70S ribosome with chloramphenicol bound.	X-ray diffraction	3.19	2010-10-20
47	3OFD\|A					Crystal structure of the E. coli ribosome bound to chloramphenicol. This file contains the 50S subunit of the second 70S ribosome.	X-ray diffraction	3.19	2010-10-20
48	3OFQ\|A					Crystal structure of the E. coli ribosome bound to erythromycin. This file contains the 50S subunit of the second 70S ribosome.	X-ray diffraction	3.1	2010-10-13
49	3OFR\|A					Crystal structure of the E. coli ribosome bound to erythromycin. This file contains the 50S subunit of the first 70S ribosome with erthromycin bound.	X-ray diffraction	3.1	2010-10-13
50	3OFZ\|A					Crystal structure of the E. coli ribosome bound to clindamycin. This file contains the 50S subunit of the first 70S ribosome bound to clindamycin.	X-ray diffraction	3.29	2010-10-20
51	3OG0\|A					Crystal structure of the E. coli ribosome bound to clindamycin. This file contains the 50S subunit of the second 70S ribosome.	X-ray diffraction	3.29	2010-10-20
52	3ORB\|A					Crystal structure of the E. coli ribosome bound to CEM-101. This file contains the 50S subunit of the first 70S ribosome bound to CEM-101.	X-ray diffraction	3.3	2010-10-06
53	3R8S\|A					Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2011-06-01
54	3R8T\|A					Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2011-06-01

Release history

Release	0.20	0.21	0.22	0.23	0.24	0.25	0.26	0.27	0.28	0.29	0.30	0.31	0.32	0.33	0.34	0.35	0.36	0.37	0.38	0.39	0.40	0.41	0.42	0.43	0.44	0.45	0.46	0.47	0.48	0.49	0.50	0.51
Date	2011-06-04	2011-06-11	2011-06-18	2011-06-25	2011-07-02	2011-07-09	2011-07-16	2011-07-23	2011-07-30	2011-08-06	2011-08-13	2011-08-20	2011-08-27	2011-09-03	2011-09-10	2011-09-17	2011-09-24	2011-10-01	2011-10-08	2011-10-15	2011-10-22	2011-10-29	2011-11-05	2011-11-12	2011-11-19	2011-11-26	2011-12-03	2011-12-10	2011-12-17	2011-12-24	2011-12-31	2012-01-07

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This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	Length

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_00834.4 Obsolete

Release history

Parents

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