#IFECompound(s)RNA source organismTitleMethodResolutionDate
13V2F|A (rep)Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 2nd ribosome in the ASUX-RAY DIFFRACTION2.72012-05-23
21VSA|wCrystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8X-RAY DIFFRACTION3.712007-05-15
31VSP|wInteractions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. This file, 1VSP, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2QNHX-RAY DIFFRACTION3.832007-11-13
41YL3|ACrystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.X-RAY DIFFRACTION5.52005-04-12
52B66|A50S ribosomal subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome. This file contains the 50S subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome and is described in remark 400X-RAY DIFFRACTION5.92006-01-10
62B9N|A50S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome. This file contains the 50S subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome and is described in remark 400.X-RAY DIFFRACTION6.762006-01-10
72B9P|A50S ribosomal subunit from a crystal structure of the ribosome in complex with tRNAs and mRNA with a stop codon in the A-site. This file contains the 50S subunit from a crystal structure of the ribosome in complex with tRNAs and mRNA with a stop codon in the A-site and is described in remark 400.X-RAY DIFFRACTION6.462006-01-10
82HGJ|ACrystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI.X-RAY DIFFRACTION52006-11-07
92HGQ|ACrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP.X-RAY DIFFRACTION5.52006-11-07
102HGU|A70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR.X-RAY DIFFRACTION4.512006-11-07
112J01|AStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin (PART 2 of 4). This file contains the 50S subunit from molecule I.X-RAY DIFFRACTION2.82006-09-28
122J03|AStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin (part 4 of 4). This file contains the 50S subunit from molecule II.X-RAY DIFFRACTION2.82006-09-28
132V47|AStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet (Part 2 of 4). This file contains the 50S subunit for Molecule 1.X-RAY DIFFRACTION3.52007-07-31
142V49|AStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet (Part 4 of 4). This file contains the 50S subunit of Molecule 2.X-RAY DIFFRACTION3.52007-07-31
152WDI|AStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. This file contains the 50S subunit for molecule I.X-RAY DIFFRACTION3.32009-04-14
162WDJ|AStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. This file contains the 50S subunit for molecule II.X-RAY DIFFRACTION3.32009-04-14
172WDL|AStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. This file contains the 50S subunit for molecule I.X-RAY DIFFRACTION3.52009-04-14
182WDN|AStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. This file contains the 50S subunit for molecule II.X-RAY DIFFRACTION3.52009-04-14
192WH2|AInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452009-05-19
202WH4|AInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452009-05-19
212WRJ|AThe structure of the ribosome with elongation factor G trapped in the post-translocational state (part 2 of 4).X-RAY DIFFRACTION3.62009-10-20
222WRL|AThe structure of the ribosome with elongation factor G trapped in the post-translocational state. (Part 4 of 4).X-RAY DIFFRACTION3.62009-10-20
232WRO|AThe crystal structure of the 70S ribosome bound to EF-Tu and tRNA (Part 2 of 4).X-RAY DIFFRACTION3.62009-10-20
242WRR|AThe crystal structure of the 70S ribosome bound to EF-Tu and tRNA (Part 4 of 4).X-RAY DIFFRACTION3.62009-10-20
252X9S|AStructure of the 70S ribosome bound to Release Factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12010-05-12
262X9U|AStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12010-05-12
272XG0|AStructure of Cytotoxic Domain of Colicin E3 Bound to the 70s Ribosome (Part 2 of 4)X-RAY DIFFRACTION3.22010-09-22
282XG2|AStructure of cytotoxic domain of colicin e3 bound to the 70s ribosome (part 4 of 4)X-RAY DIFFRACTION3.22010-09-22
292XQE|AThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12010-11-17
302XTG|AtRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)ELECTRON MICROSCOPY7.82010-12-08
312XUX|AtRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)ELECTRON MICROSCOPY7.62010-12-08
322Y0V|AThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12011-03-09
332Y0X|AThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12011-03-09
342Y0Z|AThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12011-03-09
352Y11|AThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12011-03-09
362Y13|AThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12011-03-09
372Y15|AThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12011-03-09
382Y17|AEF-Tu complex 3X-RAY DIFFRACTION3.12011-03-09
392Y19|AThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12011-03-09
403D5B|AStructural basis for translation termination on the 70S ribosome. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes as described in remark 400.X-RAY DIFFRACTION3.212008-10-07
413D5D|AStructural basis for translation termination on the 70S ribosome. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes as described in remark 400.X-RAY DIFFRACTION3.212008-10-07
423F1F|ACrystal structure of a translation termination complex formed with release factor RF2. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes as described in remark 400.X-RAY DIFFRACTION32008-12-23
433F1H|ACrystal structure of a translation termination complex formed with release factor RF2. This file contains the 50S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes as described in remark 400.X-RAY DIFFRACTION32008-12-23
443FIN|AT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. This file contains the 50S subunit.ELECTRON MICROSCOPY6.42009-03-03
453HUX|AStructure of EF-P bound to the 70S ribosome; THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I.X-RAY DIFFRACTION3.12009-09-29
463HUZ|AStructure of EF-P bound to the 70S ribosome; THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II.X-RAY DIFFRACTION3.12009-09-29
473I8F|AElongation complex of the 70S ribosome with three tRNAs and mRNA.THIS ENTRY 3I8F CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I8G. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I8G (30S) AND 3I8F (50S).X-RAY DIFFRACTION3.12010-04-21
483I8I|AElongation complex of the 70S ribosome with three tRNAs and mRNA. This entry 3I8I contains 50S ribosomal subnit. The 30S ribosomal subunit can be found in PDB entry 3I8H. Molecule A in the same asymmetric unit is deposited as 3I8F (50S) and 3I8G (30S).X-RAY DIFFRACTION3.12010-04-21
493I9C|AInitiation complex of 70S ribosome with two tRNAs and mRNA. This entry 3I9C contains 50S ribosomal subunit of molecule B. The 30S ribosomal subunit can be found in PDB entry 3I9B. Molecule A in the same asymmetric unit is deposited as 3I9D (30S) and 3I9E (50S)X-RAY DIFFRACTION3.52010-04-21
503I9E|AInitiation complex of 70S ribosome with two tRNAs and mRNA. This entry 3I9E contains 50S ribosomal subunit of molecule A. the 30S ribosomal subunit can be found in PDB entry 3I9D. Molecule B in the same asymmetric unit is deposited as 3I9B (30S) and 3I9C (50S)X-RAY DIFFRACTION3.52010-04-21
513KIR|AStructure of RelE nuclease bound to the 70S ribosome (precleavage state; Part 2 of 4)X-RAY DIFFRACTION3.32009-12-15
523KIT|AStructure of RelE nuclease bound to the 70S ribosome (precleavage state; Part 4 of 4)X-RAY DIFFRACTION3.32009-12-15
533KIW|AStructure of RelE nuclease bound to the 70S ribosome (postcleavage state; Part 2 of 4)X-RAY DIFFRACTION3.62009-12-15
543KIY|AStructure of RelE nuclease bound to the 70S ribosome (postcleavage state; Part 4 of 4)X-RAY DIFFRACTION3.62009-12-15
553KNI|AThe structures of viomycin bound to the 70S ribosome. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE IX-RAY DIFFRACTION32010-02-16
563KNK|AThe structures of viomycin bound to the 70S ribosome. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II.X-RAY DIFFRACTION32010-02-16
573KNM|AThe structures of capreomycin bound to the 70S ribosome. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I.X-RAY DIFFRACTION3.452010-02-16
583KNO|AThe structures of capreomycin bound to the 70S ribosome. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE IIX-RAY DIFFRACTION3.452010-02-16
593MRZ|ARecognition of the amber stop codon by release factor RF1. This entry 3MRZ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 3MS0. Molecule A in the same asymmetric unit is deposited as 3MR8 (50S) and 3MS1 (30S).X-RAY DIFFRACTION3.622010-07-14
603MS1|ARecognition of the amber stop codon by release factor RF1. This entry 3MS1 contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 3MR8. Molecule B in the same asymmetric unit is deposited as 3MRZ (50S) and 3MS0 (30S).X-RAY DIFFRACTION3.622010-07-14
613OH5|AStructure of the Thermus Thermophilus 70S ribosome complexed with chloramphenicol. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION32010-10-20
623OH7|AStructure of the Thermus Thermophilus 70S ribosome complexed with chloramphenicol. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION32010-10-20
633OHJ|AStructure of the Thermus thermophilus ribosome complexed with erythromycin. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION32010-10-20
643OHK|AStructure of the Thermus thermophilus ribosome complexed with erythromycin. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION32010-10-20
653OHZ|AStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION32010-10-20
663OI1|AStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION32010-10-20
673OI3|AStructure of the Thermus thermophilus 70S ribosome complexed with telithromycin. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION3.12010-10-20
683OI5|AStructure of the Thermus thermophilus 70S ribosome complexed with telithromycin. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION3.12010-10-20
693PYO|ACrystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the first 70S ribosome.X-RAY DIFFRACTION3.52011-02-09
703PYR|ACrystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the second 70S ribosome.X-RAY DIFFRACTION3.52011-02-09
713PYT|ACrystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the first 70S ribosome.X-RAY DIFFRACTION3.42011-02-09
723PYV|ACrystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the second 70S ribosome.X-RAY DIFFRACTION3.42011-02-09
733TVE|ACrystal structure analysis of ribosomal decoding. this entry contains the 50s ribosomal subunit of the first 70s molecule in the asymmetric unit for the cognate trna-leu complexX-RAY DIFFRACTION3.12012-03-21
743TVH|ACrystal structure analysis of ribosomal decoding. This entry contains the 50s ribosomal subunit of the second 70s molecule in the asymmetric unit for the cognate trna-leu complexX-RAY DIFFRACTION3.12012-03-21
753UXQ|AThe structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION3.22012-01-25
763UXR|AThe structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes.X-RAY DIFFRACTION3.22012-01-25
773UYE|ACrystal structure analysis of ribosomal decoding. this entry contains the 50s ribosomal subunit of the first 70s molecule in the asymmetric unit for the near-cognate trna-leu complexX-RAY DIFFRACTION32012-03-21
783UYG|ACrystal structure analysis of ribosomal decoding. this entry contains the 50s ribosomal subunit of the first 70s molecule in the asymmetric unit for the near-cognate trna-leu complexX-RAY DIFFRACTION32012-03-21
793UZ1|ACrystal structure analysis of ribosomal decoding. This entry contains the 50S ribosomal subunit of the first 70S molecule in the asymmetric unit for the near-cognate tRNA-leu complex with paromomycinX-RAY DIFFRACTION3.32012-03-21
803UZ2|ACrystal structure analysis of ribosomal decoding. This entry contains the 50S ribosomal subunit of the second 70S molecule in the asymmetric unit for the near-cognate tRNA-leu complex with paromomycin.X-RAY DIFFRACTION3.32012-03-21
813UZ8|ACrystal structure analysis of ribosomal decoding. This entry contains the 50S ribosomal subunit of the second 70S molecule in the asymmetric unit for the cognate tRNA-tyr complex.X-RAY DIFFRACTION32012-03-21
823UZ9|ACrystal structure analysis of ribosomal decoding. This entry contains the 50S ribosomal subunit of the first 70S molecule in the asymmetric unit for the cognate tRNA-tyr complex.X-RAY DIFFRACTION32012-03-21
833UZF|ACrystal structure analysis of ribosomal decoding. This entry contains the 50S ribosomal subunit of the first 70S molecule in the asymmetric unit for the near-cognate tRNA-tyr complexX-RAY DIFFRACTION3.32012-03-21
843UZH|ACrystal structure analysis of ribosomal decoding. This entry contains the 50S ribosomal subunit of the second 70S molecule in the asymmetric unit for the near-cognate tRNA-tyr complex.X-RAY DIFFRACTION3.32012-03-21
853UZK|ACrystal structure analysis of ribosomal decoding. this entry contains the 50s ribosomal subunit of the first 70s molecule in the asymmetric unit for the near-cognate trna-tyr complex with paromomycinX-RAY DIFFRACTION3.32012-03-21
863UZN|ACrystal structure analysis of ribosomal decoding. this entry contains the 50s ribosomal subunit of the second 70s molecule in the asymmetric unit for the near-cognate trna-tyr complex with paromomycinX-RAY DIFFRACTION3.32012-03-21
873V23|ACrystal structure of RMF bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 1st ribosome in the ASUX-RAY DIFFRACTION32012-05-23
883V25|ACrystal structure of RMF bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 2nd ribosome in the ASUX-RAY DIFFRACTION32012-05-23
893V27|ACrystal structure of HPF bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 1st ribosome in the ASUX-RAY DIFFRACTION3.12012-05-23
903V29|ACrystal structure of HPF bound to the 70S ribosome. This entry contains the 50S subunit of the 2nd molecule in the ASU.X-RAY DIFFRACTION3.12012-05-23
913V2D|ACrystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 1st ribosome in the ASUX-RAY DIFFRACTION2.72012-05-23
923V6W|ACrystal structure of the bacterial ribosome ram mutation G347U. this entry contains the 50S ribosomal subunit of the first 70S molecule in the asymmetric unitX-RAY DIFFRACTION3.92013-04-24
933V6X|ACrystal structure of the bacterial ribosome ram mutation G347U. this entry contains the 50S ribosomal subunit of the second 70S molecule in the asymmetric unitX-RAY DIFFRACTION3.92013-04-24
943ZN9|AThe crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12013-04-03
953ZNE|AThe crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12013-04-03
963ZVP|ACrystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3X-RAY DIFFRACTION3.82011-09-28
974ABS|ACOMPLEX OF SMPB, A TMRNA FRAGMENT AND EF-TU-GDP-KIRROMYCIN WITH THE 70S RIBOSOMEX-RAY DIFFRACTION3.12012-03-28
984B8G|ACrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72013-04-03
994B8I|ACrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72013-04-03
1004DHA|ACrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22012-03-28
1014DHC|ACrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22012-03-28
1024EJB|ACrystal structure of the bacterial ribosome ram mutation G299A.This entry contains the 50s ribosomal subunit of the first 70s molecule in the asymmetric unit.X-RAY DIFFRACTION3.522013-04-24
1034EJC|ACrystal structure of the bacterial ribosome ram mutation G299A. This entry contains the 50s ribosomal subunit of the second 70s molecule in the asymmetric unit.X-RAY DIFFRACTION3.522013-04-24
1044G5L|ACrystal Structure of the 70S ribosome with tetracycline. This entry contains the 50S subunit of molecule A.X-RAY DIFFRACTION3.32013-02-20
1054G5N|ACrystal Structure of the 70S ribosome with tetracycline. This entry contains the 50S subunit of molecule B.X-RAY DIFFRACTION3.32013-02-20
1064G5U|ACrystal Structure of the 70S ribosome with tigecycline. This entry contains the 50S subunit of molecule A.X-RAY DIFFRACTION3.12013-02-20
1074G5W|ACrystal Structure of the 70S ribosome with tigecycline. This entry contains the 50S subunit of molecule B.X-RAY DIFFRACTION3.12013-02-20

Release history

Release1.81.91.101.111.121.131.141.151.16
Date2013-04-272013-05-042013-05-112013-05-182013-05-252013-06-012013-06-082013-06-152013-06-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength