#IFECompound(s)RNA source organismTitleMethodResolutionDate
13B5S|1|B+ 3B5S|1|C+ 3B5S|1|A (rep)Loop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active SiteX-RAY DIFFRACTION2.252008-08-12
23B5F|1|B+ 3B5F|1|C+ 3B5F|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.72008-08-12
33BBM|1|B+ 3BBM|1|C+ 3BBM|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active SiteX-RAY DIFFRACTION2.652008-08-12
43B91|1|B+ 3B91|1|C+ 3B91|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active SiteX-RAY DIFFRACTION2.752008-08-12
54G6S|1|B+ 4G6S|1|C+ 4G6S|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B of the Ribozyme StrandMinimal Hairpin Ribozyme in the Transition State with A38P VariationX-RAY DIFFRACTION2.842012-08-08
63BBI|1|B+ 3BBI|1|C+ 3BBI|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active SiteX-RAY DIFFRACTION2.352008-08-12
73B58|1|B+ 3B58|1|C+ 3B58|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandMinimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.652008-08-12
83B5A|1|B+ 3B5A|1|C+ 3B5A|1|ALoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active siteX-RAY DIFFRACTION2.352008-08-12
93BBK|1|B+ 3BBK|1|C+ 3BBK|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandMiminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active SiteX-RAY DIFFRACTION2.752008-08-12
104G6P|1|B+ 4G6P|1|C+ 4G6P|1|ALoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B of the Ribozyme StrandMinimal Hairpin Ribozyme in the Precatalytic State with A38P VariationX-RAY DIFFRACTION2.642012-08-15

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.88
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-23

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13B58|1|B+3B58|1|C+3B58|1|AMinimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.6529
23BBK|1|B+3BBK|1|C+3BBK|1|AMiminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active SiteX-RAY DIFFRACTION2.7529
33B91|1|B+3B91|1|C+3B91|1|AMinimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active SiteX-RAY DIFFRACTION2.7529
44G6P|1|B+4G6P|1|C+4G6P|1|AMinimal Hairpin Ribozyme in the Precatalytic State with A38P VariationX-RAY DIFFRACTION2.6429
54G6S|1|B+4G6S|1|C+4G6S|1|AMinimal Hairpin Ribozyme in the Transition State with A38P VariationX-RAY DIFFRACTION2.8429
63B5S|1|B+3B5S|1|C+3B5S|1|AMinimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active SiteX-RAY DIFFRACTION2.2529
73B5F|1|B+3B5F|1|C+3B5F|1|ACrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.729
83BBI|1|B+3BBI|1|C+3BBI|1|AMinimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active SiteX-RAY DIFFRACTION2.3529
93B5A|1|B+3B5A|1|C+3B5A|1|ACrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active siteX-RAY DIFFRACTION2.3529
103BBM|1|B+3BBM|1|C+3BBM|1|AMinimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active SiteX-RAY DIFFRACTION2.6529