#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A6 (rep)18S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
25TBW|1|sR18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
34V88|1|A218S RIBOSOMAL RNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
45TBW|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
57OSA|1|18S18S rRNASaccharomyces cerevisiaePre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION32021-12-08
66HHQ|1|sR18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
75OBM|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
85I4L|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
95MEI|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
105NDW|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
115LYB|1|618S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
125I4L|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
135OBM|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
147OSM|1|18S18S rRNASaccharomyces cerevisiaeIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION32021-12-08
155MEI|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
165ON6|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
175NDW|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
186HHQ|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
195LYB|1|218S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
205NDV|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
215NDV|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
225ON6|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
235NDG|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
245NDG|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
255TGM|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
265TGM|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
274V7R|1|A118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
284V7R|1|C118S ribosomal RNASaccharomyces cerevisiaeYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
295DAT|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
305TGA|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
315DGE|1|618S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
325DGV|1|6Saccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
335DGF|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
345DC3|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
355DAT|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
365TGA|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
375DGV|1|2Saccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
385DGE|1|218S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
395DGF|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
405DC3|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
417PZY|1|A18S ribosomal RNACandida albicans SC5314Structure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.322022-05-18
427Q08|1|A18S ribosomal RNACandida albicans SC5314Structure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.562022-05-25
436T4Q|1|C218S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.62019-12-25
447MPJ|1|B518S rRNASaccharomyces cerevisiaeStm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.72022-05-11
457Q0F|1|A18S ribosomal RNACandida albicans SC5314Structure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.642022-05-18
467Q0R|1|A18S ribosomal RNACandida albicans SC5314Structure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.672022-05-25
477Q0P|1|A18S ribosomal RNACandida albicans SC5314Structure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.772022-05-18
486WOO|1|218S ribosomal RNASaccharomyces cerevisiaeCryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.92020-09-23
494U4R|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
506TB3|1|2Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.82020-04-22
516SNT|1|2Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeYeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.82020-03-04
524U4R|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
534U3U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
547A1G|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY32020-10-14
556ZVI|1|h18S rRNASaccharomyces cerevisiaeMbf1-ribosome complexELECTRON MICROSCOPY32020-09-09
564U3U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
577N8B|1|B518S RIBOSOMAL RNASaccharomyces cerevisiaeCycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.052022-05-11
587MPI|1|B518S rRNASaccharomyces cerevisiaeStm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.052022-05-11
594U3M|1|618S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
604U4Q|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
614U4U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
624U52|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
634U3M|1|218S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
647RR5|1|C218S rRNASaccharomyces cerevisiaeStructure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.232021-11-10
654U52|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
664U4U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
674U6F|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
684U4Q|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
694U4N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
706Q8Y|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.12019-03-13
714U6F|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
724U4Z|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
736XIR|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
747B7D|1|218S rRNASaccharomyces cerevisiae S288CYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.32021-03-10
756SV4|1|2b18S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
766SV4|1|2c18S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
774U4Y|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
784U3N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
794U4Z|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
806T7T|1|C218S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.12019-12-25
814U55|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
825M1J|1|2218S ribosomal RNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
834U4N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
846T7I|1|C218S ribosomal RNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.22019-12-25
854U50|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
864U51|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
874U3N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
886S47|1|BA18S rRNA (1707-MER)Saccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.282019-07-24
894U4Y|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
904U51|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
914U55|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
926TNU|1|218S rRNASaccharomyces cerevisiaeYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.12020-04-22
936Z6K|1|C218S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.42020-07-29
946Z6J|1|C218S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.42020-07-29
956FAI|1|220S ribosomal RNASaccharomyces cerevisiaeStructure of a eukaryotic cytoplasmic pre-40S ribosomal subunitELECTRON MICROSCOPY3.42018-02-28
964U50|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
975JUP|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
984U53|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
996RBD|1|220S ribosomal RNASaccharomyces cerevisiaeState 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.472019-06-26
1004U53|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
1016SV4|1|218S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1024U56|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1036LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeCryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.22020-09-16
1044U56|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1057NRC|1|S218S rRNA (1771-MER)Saccharomyces cerevisiae S288CStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.92021-05-05
1065MC6|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.82017-01-18
1076KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiae3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.42020-08-05
1086T83|1|2b18S rRNASaccharomyces cerevisiaeStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
1096EML|1|2pre-18S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiaeELECTRON MICROSCOPY3.62017-11-29
1106T83|1|a18S rRNASaccharomyces cerevisiaeStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
1115JUO|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1126RBE|1|218S ribosomal RNASaccharomyces cerevisiaeState 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.82019-06-26
1135JUT|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1145JUU|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1156Y7C|1|220S ribosomal RNASaccharomyces cerevisiaeEarly cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)ELECTRON MICROSCOPY3.82020-03-18
1166GQB|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.92018-07-11
1176GQV|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY42018-07-11
1186ZQG|1|D318S rRNA, U3 snoRNASaccharomyces cerevisiaeCryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.52020-09-23
1194U4O|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1204U4O|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1216LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3A18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeCryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.72020-09-16
1227D4I|1|SA18S rRNASaccharomyces cerevisiae S288CCryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)ELECTRON MICROSCOPY42021-10-06
1236ZQD|1|D318S rRNASaccharomyces cerevisiaeCryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.82020-09-23
1247AJU|1|D318S rRNASaccharomyces cerevisiae S288CCryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.82020-12-30
1256LQS|1|SA18S pre-rRNASaccharomyces cerevisiaeCryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.82020-09-16
1265LL6|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiationELECTRON MICROSCOPY3.92017-04-12
1276ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D418S rRNA, 5ETS RNA, U3 snoRNASaccharomyces cerevisiaeCryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.92020-09-23
1286ZQC|1|D318S rRNASaccharomyces cerevisiaeCryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.82020-09-23
1295WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L218S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeThe complete structure of the small subunit processomeELECTRON MICROSCOPY3.82017-09-27

Release history

Release3.2323.2333.2343.2353.2363.237
Date2022-05-252022-06-012022-06-082022-06-152022-06-222022-06-29

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16SV4|1|2cThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
26SV4|1|2bThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
36ZVI|1|hMbf1-ribosome complexELECTRON MICROSCOPY31758
46XIR|1|2Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.21708
54V7R|1|C1Yeast 80S ribosome.X-RAY DIFFRACTION41789
65NDG|1|6Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71700
75NDW|1|6Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71736
85NDV|1|6Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31683
95OBM|1|6Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41739
104U4O|1|6Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61791
114U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
124U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
134U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
144U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
154U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
164U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
174U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
184U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
194U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
205I4L|1|6Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
215TGA|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31796
225LYB|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251796
234V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
244U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
254U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
264U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
274U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
284U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
294U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
305TBW|1|sRCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31783
316HHQ|1|sRCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11783
325MEI|1|6Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51783
335ON6|1|6Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11783
344U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
355TGM|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51796
365DGV|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11796
375DC3|1|6Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251796
385DGE|1|6Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451796
395DGF|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31796
405DAT|1|6Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151796
416Z6K|1|C2Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.41700
426Z6J|1|C2Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.41700
436S47|1|BASaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.281707
446T83|1|aStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY41758
456SV4|1|2The cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
465JUU|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY41781
476WOO|1|2CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.91780
485M1J|1|22Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.31781
496T83|1|2bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY41771
506TB3|1|2yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.81771
516SNT|1|2Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.81771
526T4Q|1|C2Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.61771
536T7I|1|C2Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.21771
546T7T|1|C2Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.11771
557B7D|1|2Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.31771
567NRC|1|S2Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.91771
576TNU|1|2Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.11771
587RR5|1|C2Structure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.231771
596Q8Y|1|2Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.11767
605MC6|1|2Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.81767
615LL6|1|2Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiationELECTRON MICROSCOPY3.91325
627OSA|1|18SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31717
636GQB|1|2Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.91776
646GQV|1|2Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY41776
657A1G|1|2Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY31771
667Q0R|1|AStructure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.671692
677Q0P|1|AStructure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.771692
687PZY|1|AStructure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.321692
697Q0F|1|AStructure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.641692
707Q08|1|AStructure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.561692
717OSM|1|18SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31732
725NDV|1|2Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31712
734U4O|1|2Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61750
745DGE|1|2Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451782
755LYB|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251782
764V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
775TGA|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31782
785I4L|1|2Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
794U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
804U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
814U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
824U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
834U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
844U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
854U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
864U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
874U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
885TBW|1|ACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31781
896HHQ|1|ACrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
905ON6|1|ACrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11781
915MEI|1|ACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51781
924U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
934U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
944U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
954U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
964U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
974U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
984U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
995TGM|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51782
1005DGV|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11782
1015DC3|1|2Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251782
1025DGF|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31782
1035DAT|1|2Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151782
1045OBM|1|2Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41712
1055NDW|1|2Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71770
1065NDG|1|2Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71688
1077MPI|1|B5Stm1 bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.051757
1087MPJ|1|B5Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.71744
1097N8B|1|B5Cycloheximide bound vacant 80S structure isolated from cbf5-D95AELECTRON MICROSCOPY3.051759
1105JUO|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY41781
1115JUT|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY41781
1125JUP|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.51781
1134V7R|1|A1Yeast 80S ribosome.X-RAY DIFFRACTION41789
1146RBE|1|2State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.81750
1156FAI|1|2Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunitELECTRON MICROSCOPY3.41775
1166RBD|1|2State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.471777
1176Y7C|1|2Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)ELECTRON MICROSCOPY3.81731
1186EML|1|2Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiaeELECTRON MICROSCOPY3.61675
1196ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387
1206ZQD|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.81409
1217AJU|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.81409
1227D4I|1|SACryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)ELECTRON MICROSCOPY41337
1236LQS|1|SACryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.81249
1246ZQC|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.81327
1256ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.91198
1266KE6|1|SA+6KE6|1|5A+6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.41310
1276LQP|1|SA+6LQP|1|5A+6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.21325
1286LQU|1|SA+6LQU|1|5A+6LQU|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.71242
1295WLC|1|L1+5WLC|1|L0+5WLC|1|L2The complete structure of the small subunit processomeELECTRON MICROSCOPY3.81025