#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A6 (rep)Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
24U4R|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
34U50|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
44U4Q|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
54U3U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
65LYB|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
74U52|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
84U4U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
94V88|1|A2Small subunit ribosomal RNA18S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
104U4R|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
115FCJ|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
125I4L|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
134U3U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
145DC3|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
155FCI|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
164U3N|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
174U4N|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
184U55|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
194U6F|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
205DAT|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
214U4Y|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
224U53|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
234U4Q|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
244U4U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
254U4Z|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
264U4N|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
274U52|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
284U3M|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
294U51|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
304U3M|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
314U55|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
324U51|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
334U4Z|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
345I4L|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
355TGA|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
364U3N|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
374U50|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
384U56|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
394U4Y|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
405LYB|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
414U53|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
424U6F|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
435TGA|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
445DC3|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
455FCJ|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
465DAT|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
475FCI|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
484U56|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
495JUU|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy42016-10-05
504U4O|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
515JUP|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.52016-10-05
525JUT|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy42016-10-05
534U4O|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
545JUO|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy42016-10-05
554V7R|1|C1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome.X-ray diffraction42014-07-09
564V7R|1|A1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome.X-ray diffraction42014-07-09

Release history

Release2.1032.1042.105
Date2016-11-252016-12-022016-12-09

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
4V7R|1|A1
Yeast 80S ribosome.X-RAY DIFFRACTION41789
2
4U56|1|2
Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
3
4U52|1|2
Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
4
4U50|1|2
Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
5
4U53|1|2
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
6
4U51|1|2
Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
7
4U55|1|2
Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
8
4U4Z|1|2
Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
9
4U4Y|1|2
Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
10
4U3M|1|2
Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
11
4U3U|1|2
Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
12
4U4R|1|2
Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
13
4U4Q|1|2
Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
14
4U4U|1|2
Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
15
4U4N|1|2
Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
16
5I4L|1|2
Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
17
4U3N|1|2
Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
18
4U6F|1|2
Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
19
4V88|1|A2
The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
20
5LYB|1|2
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251782
21
5TGA|1|2
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31782
22
5FCJ|1|2
Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11782
23
5FCI|1|2
Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41782
24
5DC3|1|2
Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251782
25
5DAT|1|2
Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151782
26
4U4O|1|2
Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61750
27
5JUP|1|A
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.51781
28
5JUT|1|A
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY41781
29
5JUO|1|A
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY41781
30
5JUU|1|A
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY41781
31
4U4O|1|6
Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61791
32
5DC3|1|6
Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251796
33
5DAT|1|6
Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151796
34
4U53|1|6
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
35
4U50|1|6
Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
36
4U4Z|1|6
Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
37
4U55|1|6
Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
38
4U51|1|6
Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
39
5I4L|1|6
Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
40
4U4N|1|6
Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
41
4U4U|1|6
Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
42
4U4Q|1|6
Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
43
5FCI|1|6
Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41796
44
5FCJ|1|6
Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11796
45
4U4R|1|6
Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
46
4U3U|1|6
Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
47
4U3M|1|6
Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
48
4U6F|1|6
Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
49
4U3N|1|6
Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
50
4U52|1|6
Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
51
4U56|1|6
Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
52
4U4Y|1|6
Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
53
5TGA|1|6
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31796
54
5LYB|1|6
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251796
55
4V88|1|A6
The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
56
4V7R|1|C1
Yeast 80S ribosome.X-RAY DIFFRACTION41789

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