#PDBTitleRNA source organismCompoundsMethodResolutionDate
15LZS|1|5+5LZS|1|8 (rep)Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BtRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, Uncharacterized protein, uS2, Uncharacterized protein, 40S ribosomal protein S3a, Uncharacterized protein,uL4, uS5, 60S ribosomal protein L5, Uncharacterized protein, 60S ribosomal protein L6, 40S ribosomal protein S4, Uncharacterized protein, Uncharacterized protein, eL8,Uncharacterized protein, 40S ribosomal protein S6, Uncharacterized protein, Uncharacterized protein, Ribosomal protein L10 (Predicted), 40S ribosomal protein S8, Uncharacterized protein, Ribosomal protein S9 (Predicted), Uncharacterized protein, eL13, Uncharacterized protein, Uncharacterized protein, 40S ribosomal protein S12, Ribosomal protein L15, Uncharacterized protein, uL13, uS11,Uncharacterized protein, Uncharacterized protein, Uncharacterized protein, eL18, Uncharacterized protein, eL19, Uncharacterized protein, eL20, Uncharacterized protein, Uncharacterized protein, Uncharacterized protein, eL22, Uncharacterized protein, Uncharacterized proELECTRON MICROSCOPY3.312016-11-30
25LZZ|1|5+5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Nascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, Uncharacterized protein, 60S ribosomal protein L6, eS4, Uncharacterized protein, uS7, 60S ribosomal protein L7a,eL8, 40S ribosomal protein S6, uL6, eS7, Ribosomal protein L10 (Predicted), 40S ribosomal protein S8, uL5, Ribosomal protein S9 (Predicted), Uncharacterized protein, eL13, Uncharacterized protein, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, 40S ribosomal protein S24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, 60S ribosomal protein L36, Protein pelota homolog, Ribosomal protein L37, HBS1-like protein, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.472016-11-30
35LZX|1|5+5LZX|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Nascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, Ul3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, eS4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, Ribosomal protein L10 (Predicted), eS8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), 60S ribosomal protein L36, Protein pelota homolog, Ribosomal protein L37, HBS1-like protein, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.672016-11-30
45LZU|1|5+5LZU|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, 40S ribosomal protein S4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, uL16, 40S ribosomal protein S8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), 60S ribosomal protein L36, Eukaryotic peptide chain release factor subunit 1, Ribosomal protein L37, eL38, eL39, eL40, 60s ribosomal protein l41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.752016-11-30
55LZW|1|5+5LZW|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Nascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (truncated), eL36, Pelota, eL37, Hbs1l, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.532016-11-30
65LZT|1|5+5LZT|1|8Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Nascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), eL36, eRF1, eL37, eRF3a, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.652016-11-30
75LZY|1|5+5LZY|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.tRNA, tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, eS4, uL30, uS7, eL8, 40S ribosomal protein S6, uL6, eS7, Ribosomal protein L10 (Predicted), eS8, uL5, Ribosomal protein S9 (Predicted), eS10, eL13, uS17, eL14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, eL14, eS21, eL24, uS8, eL23, uS12, uL24, eS24, 60S ribosomal protein L27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (polyadenylated), 60S ribosomal protein L36, Protein pelota homolog, eL37, HBS1-like protein, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.992016-11-30
85LZV|1|5+5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Nascent chain, P-site tRNA, E-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA (UGA stop codon), eL36, eRF1(AAQ), eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.352016-11-30
93J92|1|5+3J92|1|8Structure and assembly pathway of the ribosome quality control complexListerin, nascent chain, tRNA, 28S rRNA, 5S rRNA, 5.8S rRNA, uL2, uL3, uL4, uL18, eL6, eL30, eL8, uL6, uL16, uL5, eL13, eL14, eL15, uL13, uL22, eL18, eL19, eL20, eL21, eL22, uL14, eL24, uL23, uL24, eL27, uL15, eL29, eL30, eL31, eL32, eL33, eL34, uL29, eL36, eL37, eL38, eL39, eL40, eL42, eL43, eL28, uL10, uL11, NEMF, NEMF, Listerin, Listerin, Listerin, ListerinELECTRON MICROSCOPY3.62015-01-21
103JAI|1|5+3JAI|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonpeptide, tRNA(Val), tRNA(Lys), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, eL36, eRF1, eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.652015-08-12
113JAG|1|5+3JAG|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonpeptide, tRNA(Val), tRNA(Lys), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, eL18, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, eL36, eRF1, eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.652015-08-12
123JAH|1|5+3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonpeptide, tRNA(Val), tRNA(Lys), 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, uL2, uS2, uL3, eS1, uL4, uS5, uL18, uS3, eL6, eS4, uL30, uS7, eL8, eS6, uL6, eS7, uL16, eS8, uL5, uS4, eS10, eL13, uS17, eL14, eS12, eL15, uS15, uL13, uS11, uL22, uS19, uL14, uS9, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, uL14, eS21, eL24, uS8, uL23, uS12, uL24, eS24, eL27, eS25, uL15, eS26, eL29, eS27, eL30, eS28, eL31, uS14, eL32, eS30, eL33, eS31, eL34, RACK1, uL29, mRNA, eL36, eRF1, eL37, ABCE1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, uL11ELECTRON MICROSCOPY3.452015-08-12
133JAJ|1|5+3JAJ|1|8Structure of the engaged state of the mammalian SRP-ribosome complexNascent chain, Val tRNA, SRP 7S RNA, 28S ribosomal RNA, SRP68, 5S ribosomal RNA, 5.8S ribosomal RNA, SRP19, Ribosomal protein uL2, Ribosomal protein uL3, Ribosomal protein uL4, Ribosomal protein uL18, Ribosomal protein eL6, Ribosomal protein uL30, Ribosomal protein eL8, Ribosomal protein uL6, Ribosomal protein uL16, Ribosomal protein uL5, Ribosomal protein uL11, Ribosomal protein eL13, Ribosomal protein eL14, Ribosomal protein eL15, Ribosomal protein uL13, Ribosomal protein uL22, Ribosomal protein eL18, Ribosomal protein eL19, Ribosomal protein eL20, SRP9, 18S ribosomal RNA, SRP14, Ribosomal protein uS2, Ribosomal protein eS1, Ribosomal protein uS5, Ribosomal protein uS3, Ribosomal protein eS4, Ribosomal protein uS7, Ribosomal protein eS6, Ribosomal protein eS7, Ribosomal protein eS8, Ribosomal protein uS4, Ribosomal protein eS10, Ribosomal protein uS17, Ribosomal protein eS12, Ribosomal protein uS15, Ribosomal protein uS11, Ribosomal protein uS19, Ribosomal protein uS9, Ribosomal protein eS17, Ribosomal protELECTRON MICROSCOPY3.752015-08-05
143JAN|1|5+3JAN|1|8Structure of the scanning state of the mammalian SRP-ribosome complexVal tRNA, SRP 7S RNA, 28S ribosomal RNA, SRP68, 5S ribosomal RNA, 5.8S ribosomal RNA, SRP19, Ribosomal protein uL2, Ribosomal protein uL3, Ribosomal protein uL4, Ribosomal protein uL18, Ribosomal protein eL6, Ribosomal protein uL30, Ribosomal protein eL8, Ribosomal protein uL6, Ribosomal protein uL16, Ribosomal protein uL5, Ribosomal protein uL11, Ribosomal protein eL13, Ribosomal protein eL14, Ribosomal protein eL15, Ribosomal protein uL13, Ribosomal protein uL22, Ribosomal protein eL18, Ribosomal protein eL19, Ribosomal protein eL20, SRP9, 18S ribosomal RNA, SRP14, Ribosomal protein uS2, Ribosomal protein eS1, Ribosomal protein uS5, Ribosomal protein uS3, Ribosomal protein eS4, Ribosomal protein uS7, Ribosomal protein eS6, Ribosomal protein eS7, Ribosomal protein eS8, Ribosomal protein uS4, Ribosomal protein eS10, Ribosomal protein uS17, Ribosomal protein eS12, Ribosomal protein uS15, Ribosomal protein uS11, Ribosomal protein uS19, Ribosomal protein uS9, Ribosomal protein eS17, Ribosomal protein uS13, RibosELECTRON MICROSCOPY3.752015-08-05

Release history

Release2.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.155
Date2016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-17

Children

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13J92|1|5+3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662
23JAJ|1|5+3JAJ|1|8Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
33JAN|1|5+3JAN|1|8Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
43JAG|1|5+3JAG|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653662
53JAH|1|5+3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
63JAI|1|5+3JAI|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653662
75LZV|1|5+5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
85LZU|1|5+5LZU|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753543
95LZS|1|5+5LZS|1|8Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
105LZT|1|5+5LZT|1|8Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653543
115LZW|1|5+5LZW|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533543
125LZX|1|5+5LZX|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673543
135LZZ|1|5+5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
145LZY|1|5+5LZY|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993543