Equivalence class NR_4.0_09297.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O5B|1|U (rep) | Transfer RNA | tRNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | Electron microscopy | 3.33 | 2022-02-02 |
| 2 | 8QPP|1|U | Transfer RNA | tRNA (77-MER) | Bacillus subtilis | Bacteria | RF00005 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.4 | 2023-12-27 |
| 3 | 7QV1|1|H | Transfer RNA | P-site tRNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis collided disome (Leading 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 4 | 7QV2|1|H | Transfer RNA | A/P-site tRNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 5 | 7QV2|1|x | Transfer RNA | P/E-site tRNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 6 | 3J9W|1|AX | Transfer RNA | tRNA-Asp, mRNA | Bacillus subtilis | Bacteria | RF00005 | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | Electron microscopy | 3.9 | 2015-04-29 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7O5B|1|U | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | ELECTRON MICROSCOPY | 3.33 | 77 |
| 2 | 8QPP|1|U | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.4 | 77 |
| 3 | 7QV1|1|H | Bacillus subtilis collided disome (Leading 70S) | ELECTRON MICROSCOPY | 3.5 | 77 |
| 4 | 3J9W|1|AX | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 77 |
| 5 | 7QV2|1|H | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 77 |
| 6 | 7QV2|1|x | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 76 |