NR_4.0_10157.16

Members (99)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J88\|1\|DB (rep)	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
2	4U26\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
3	3J9Y\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome	Electron microscopy	3.9	2015-04-15
4	5AFI\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
5	4U20\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
6	4WWW\|1\|RB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
7	4U27\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
8	4U24\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
9	4WF1\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
10	4V6E\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.71	2014-07-09
11	4V6D\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.81	2014-07-09
12	5J8A\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
13	4YBB\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
14	4V7V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
15	4V6D\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.81	2014-07-09
16	4V7T\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
17	5J88\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
18	4U1U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
19	4U25\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
20	4U1V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
21	4U1U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
22	4V9C\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
23	4V56\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-ray diffraction	3.93	2014-07-09
24	4V56\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-ray diffraction	3.93	2014-07-09
25	4V6C\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
26	5GAG\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with SRP-SR in the closed state	Electron microscopy	3.8	2016-01-27
27	5JC9\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
28	5J91\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
29	5IQR\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
30	5JU8\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA	Electron microscopy	3.6	2016-07-20
31	4V6C\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
32	4V7S\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
33	4U20\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
34	4V9D\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
35	4V55\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-ray diffraction	4	2014-07-09
36	4V54\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
37	4V50\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
38	4V50\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
39	4V55\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-ray diffraction	4	2014-07-09
40	4V54\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
41	4V7S\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
42	5GAD\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC-SRP-SR complex early state	Electron microscopy	3.7	2016-01-27
43	5GAH\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with SRP with detached NG domain	Electron microscopy	3.8	2016-01-27
44	3J9Z\|1\|LB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01
45	4V6E\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.71	2014-07-09
46	4V7U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
47	5J91\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
48	4V9P\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
49	5J8A\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
50	4YBB\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
51	4U27\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
52	4WF1\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
53	4U25\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
54	4V9D\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
55	4WOI\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
56	4V64\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
57	4V64\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
58	4V7T\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
59	5GAE\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with a translocating SecYEG	Electron microscopy	3.33	2016-01-27
60	4V9O\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
61	3J7Z\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E. coli 50S subunit with ErmCL nascent chain	Electron microscopy	3.9	2014-10-22
62	4UY8\|1\|B	5S ribosomal RNA	RRNA-5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome	Electron microscopy	3.8	2014-10-29
63	5JTE\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	Electron microscopy	3.6	2016-07-20
64	4WOI\|1\|CB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
65	5JC9\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
66	4U24\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
67	4U1V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
68	4V57\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
69	4V53\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-ray diffraction	3.54	2014-07-09
70	4V4Q\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
71	4V52\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
72	4V4H\|1\|BA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
73	4V4Q\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
74	4V52\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
75	4V53\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-ray diffraction	3.54	2014-07-09
76	4V4H\|1\|DA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
77	4V57\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
78	3JA1\|1\|LB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01
79	4V85\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-ray diffraction	3.2	2014-07-09
80	4V9O\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
81	4U26\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
82	4V7V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
83	4WWW\|1\|YB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
84	4V9P\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
85	4V9P\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
86	3JCJ\|1\|0	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association	Electron microscopy	3.7	2016-03-09
87	3JCD\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)	Electron microscopy	3.7	2016-01-13
88	4V9O\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
89	4V89\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)	X-ray diffraction	3.7	2014-07-09
90	3JCE\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
91	4V9O\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
92	4V9P\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
93	4V7U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
94	3JBV\|1\|a	5S ribosomal RNA	RNA (118-MER)	Escherichia coli	Bacteria	RF00001	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.32	2016-01-27
95	5L3P\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex	Electron microscopy	3.7	2016-07-20
96	3JBU\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.64	2016-01-27
97	4V9C\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
98	4V5B\|1\|AA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Structure of PDF binding helix in complex with the ribosome	X-ray diffraction	3.74	2014-07-09
99	4V5B\|1\|CA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Structure of PDF binding helix in complex with the ribosome	X-ray diffraction	3.74	2014-07-09

Release history

Release	2.85
Date	2016-07-22

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_10157.16	NR_all_10157.15	2.85	(96) 4V4H\|1\|BA, 3J9Y\|1\|B, 4U20\|1\|DB, 5IQR\|1\|3, 4V9D\|1\|CB, 4WOI\|1\|CB, 4V7T\|1\|BB, 4V52\|1\|DA, 4V5B\|1\|CA, 4U26\|1\|DB, 5JC9\|1\|CB, 4U1U\|1\|DB, 5GAE\|1\|B, 4V89\|1\|BB, 4V9P\|1\|GB, 4V6E\|1\|BB, 4V4Q\|1\|DA, 4V57\|1\|BA, 4U25\|1\|BB, 5J8A\|1\|CB, 3JCD\|1\|B, 4YBB\|1\|CB, 4V7U\|1\|DB, 4V9O\|1\|GB, 4V6C\|1\|DB, 4V55\|1\|BA, 4U20\|1\|BB, 3JA1\|1\|LB, 4WOI\|1\|BB, 4V7S\|1\|DB, 4V9O\|1\|AB, 4V53\|1\|BA, 4U27\|1\|DB, 5GAD\|1\|B, 5JC9\|1\|DB, 4V9C\|1\|BB, 4V56\|1\|DA, 4V50\|1\|DA, 4U25\|1\|DB, 4WWW\|1\|YB, 5J91\|1\|CB, 4V7V\|1\|BB, 4V6D\|1\|BB, 4V4H\|1\|DA, 3J9Z\|1\|LB, 4U24\|1\|BB, 5J88\|1\|CB, 4V9D\|1\|DB, 4V7T\|1\|DB, 4V64\|1\|BA, 4U27\|1\|BB, 4U1V\|1\|BB, 5GAG\|1\|B, 4WF1\|1\|BB, 4V6E\|1\|DB, 4V50\|1\|BA, 4V57\|1\|DA, 5J8A\|1\|DB, 3JCE\|1\|B, 4YBB\|1\|DB, 4V9P\|1\|AB, 4V55\|1\|DA, 3JBU\|1\|a, 4V9O\|1\|CB, 4V53\|1\|DA, 4V9C\|1\|DB, 4V52\|1\|BA, 3J7Z\|1\|B, 4U26\|1\|BB, 5J91\|1\|DB, 4V7V\|1\|DB, 4V4Q\|1\|BA, 4U24\|1\|DB, 5J88\|1\|DB, 4V7U\|1\|BB, 4V64\|1\|DA, 4U1V\|1\|DB, 4V7S\|1\|BB, 4V5B\|1\|AA, 3JCJ\|1\|0, 5AFI\|1\|B, 4V9P\|1\|CB, 4V56\|1\|BA, 3JBV\|1\|a, 4WWW\|1\|RB, 4V9O\|1\|EB, 4V54\|1\|BA, 4WF1\|1\|DB, 4V85\|1\|BB, 4UY8\|1\|B, 5GAH\|1\|B, 4U1U\|1\|BB, 4V6D\|1\|DB, 4V6C\|1\|BB, 4V54	(3) 5JU8\|1\|BB, 5L3P\|1\|B, 5JTE\|1\|BB	(49) 4V7I\|1\|A7, 4V6L\|1\|BA, 4V6M\|1\|B7, 3BBX\|1\|A, 4V6S\|1\|AA, 4V6T\|1\|BB, 2J28\|1\|A, 4V6Q\|1\|BA, 4V6R\|1\|BA, 5GAF\|1\|B, 4V70\|1\|BB, 4V6P\|1\|BA, 3JCN\|1\|B, 4V6Y\|1\|BB, 4V6Z\|1\|BB, 3J5L\|1\|B, 4V6V\|1\|Ba, 2RDO\|1\|A, 4V73\|1\|BB, 4V48\|1\|A9, 4V71\|1\|BB, 4V72\|1\|BB, 4CSU\|1\|A, 3J8G\|1\|A, 4V76\|1\|BB, 4V5H\|1\|BA, 4V74\|1\|BB, 4V75\|1\|BB, 4V4V\|1\|B9, 4V47\|1\|A9, 4V79\|1\|BB, 4V7A\|1\|BB, 4V65\|1\|BA, 4V78\|1\|BB, 4V5Y\|1\|BA, 4V4W\|1\|B9, 4V7C\|1\|BB, 4V7D\|1\|AB, 4V6K\|1\|AA, 4V7B\|1\|BB, 4V66\|1\|BA, 4V69\|1\|BA, 4V5Y\|1\|DA, 5AKA\|1\|A, 4V6N\|1\|AA, 4V6O\|1\|BA, 5ADY\|1\|A, 1C2X\|1\|C, 4V77\|1\|BB

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V9O\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
2	4V9P\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
3	3JCD\|1\|B	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)	ELECTRON MICROSCOPY	3.7	118
4	3JCE\|1\|B	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	118
5	5L3P\|1\|B	Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex	ELECTRON MICROSCOPY	3.7	120
6	5AFI\|1\|B	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	120
7	3J9Y\|1\|B	Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome	ELECTRON MICROSCOPY	3.9	120
8	4V7U\|1\|DB	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	117
9	4WWW\|1\|YB	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	117
10	4V7T\|1\|DB	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	117
11	4V7V\|1\|DB	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	117
12	4V7S\|1\|DB	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	117
13	4V6C\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	117
14	4V6E\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.71	117
15	4V6D\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.81	117
16	4WOI\|1\|CB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	118
17	4V9C\|1\|BB	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	118
18	4V9P\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
19	4V9O\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
20	4YBB\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	118
21	5JC9\|1\|CB	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	118
22	5J8A\|1\|CB	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	118
23	5J91\|1\|CB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	118
24	5J88\|1\|CB	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	118
25	5JTE\|1\|BB	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	ELECTRON MICROSCOPY	3.6	118
26	5JU8\|1\|BB	Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA	ELECTRON MICROSCOPY	3.6	118
27	4WF1\|1\|DB	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	118
28	4U26\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	118
29	4U24\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	118
30	4U25\|1\|DB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	118
31	4U27\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	118
32	4U1V\|1\|DB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	118
33	4U20\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	118
34	4U1U\|1\|DB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	118
35	4V9D\|1\|DB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	118
36	5IQR\|1\|3	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	118
37	5GAG\|1\|B	RNC in complex with SRP-SR in the closed state	ELECTRON MICROSCOPY	3.8	120
38	5GAD\|1\|B	RNC-SRP-SR complex early state	ELECTRON MICROSCOPY	3.7	120
39	5GAH\|1\|B	RNC in complex with SRP with detached NG domain	ELECTRON MICROSCOPY	3.8	120
40	3JCJ\|1\|0	Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association	ELECTRON MICROSCOPY	3.7	118
41	4V9P\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
42	4V9P\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
43	4V9O\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
44	4V9O\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
45	4UY8\|1\|B	Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome	ELECTRON MICROSCOPY	3.8	118
46	3J7Z\|1\|B	Structure of the E. coli 50S subunit with ErmCL nascent chain	ELECTRON MICROSCOPY	3.9	118
47	4WOI\|1\|BB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	119
48	4V9C\|1\|DB	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	119
49	4V9D\|1\|CB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	119
50	4YBB\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	120
51	5J91\|1\|DB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	120
52	5J8A\|1\|DB	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	120
53	5JC9\|1\|DB	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	120
54	5J88\|1\|DB	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	120
55	4U1V\|1\|BB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	119
56	4U20\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	119
57	4U1U\|1\|BB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	119
58	4WF1\|1\|BB	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	119
59	4U25\|1\|BB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	119
60	4U27\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	119
61	4U26\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	119
62	4U24\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	119
63	4WWW\|1\|RB	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	118
64	4V7S\|1\|BB	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	118
65	4V6C\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	118
66	4V7T\|1\|BB	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	118
67	4V7V\|1\|BB	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	118
68	4V7U\|1\|BB	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	118
69	4V6E\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.71	118
70	4V6D\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.81	118
71	4V85\|1\|BB	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-RAY DIFFRACTION	3.2	118
72	4V89\|1\|BB	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)	X-RAY DIFFRACTION	3.7	118
73	5GAE\|1\|B	RNC in complex with a translocating SecYEG	ELECTRON MICROSCOPY	3.33	120
74	3J9Z\|1\|LB	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	120
75	3JA1\|1\|LB	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	120
76	4V56\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-RAY DIFFRACTION	3.93	117
77	4V56\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-RAY DIFFRACTION	3.93	117
78	4V57\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	117
79	4V52\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	117
80	4V64\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	117
81	4V53\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-RAY DIFFRACTION	3.54	117
82	4V55\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-RAY DIFFRACTION	4	117
83	4V54\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	117
84	4V54\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	117
85	4V55\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-RAY DIFFRACTION	4	117
86	4V53\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-RAY DIFFRACTION	3.54	117
87	4V64\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	117
88	4V52\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	117
89	4V57\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	117
90	4V50\|1\|BA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	117
91	4V50\|1\|DA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	117
92	4V4H\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	117
93	4V4Q\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	117
94	4V5B\|1\|AA	Structure of PDF binding helix in complex with the ribosome	X-RAY DIFFRACTION	3.74	117
95	4V5B\|1\|CA	Structure of PDF binding helix in complex with the ribosome	X-RAY DIFFRACTION	3.74	117
96	4V4Q\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	117
97	4V4H\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	117
98	3JBV\|1\|a	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.32	117
99	3JBU\|1\|a	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.64	118

Equivalence class NR_4.0_10157.16 Obsolete

Release history

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