Equivalence class NR_4.0_10157.33 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 5J7L|1|DB (rep) | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
2 | 5JC9|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
3 | 5J8A|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
4 | 4YBB|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
5 | 4WOI|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
6 | 5IT8|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
7 | 5J91|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
8 | 4U27|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
9 | 5J88|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
10 | 4WF1|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
11 | 4WOI|1|CB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
12 | 4V9D|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
13 | 4V9P|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
14 | 4V9P|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
15 | 4U24|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
16 | 4V9O|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
17 | 4WWW|1|RB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
18 | 4U26|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
19 | 4V9P|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
20 | 4V7T|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
21 | 4V9O|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
22 | 4V6C|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
23 | 4U25|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
24 | 4V9O|1|EB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
25 | 4V9P|1|AB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
26 | 4U1U|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
27 | 4V7U|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
28 | 4U20|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
29 | 4V7V|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
30 | 4V9C|1|DB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
31 | 4U1V|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
32 | 4V52|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
33 | 5J7L|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-ray diffraction | 3 | 2016-07-27 |
34 | 4V52|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-ray diffraction | 3.21 | 2014-07-09 |
35 | 4V7S|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
36 | 5J8A|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-ray diffraction | 3.1 | 2016-07-06 |
37 | 4V9D|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
38 | 4V50|1|DA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
39 | 5JC9|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-ray diffraction | 3.03 | 2016-07-06 |
40 | 4V85|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-ray diffraction | 3.2 | 2014-07-09 |
41 | 4V57|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
42 | 4V64|1|DA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
43 | 4V64|1|BA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-ray diffraction | 3.5 | 2014-07-09 |
44 | 4V57|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-ray diffraction | 3.5 | 2014-07-09 |
45 | 4V6D|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.81 | 2014-07-09 |
46 | 4V54|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
47 | 4V54|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-ray diffraction | 3.3 | 2014-07-09 |
48 | 4V53|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | X-ray diffraction | 3.54 | 2014-07-09 |
49 | 4V53|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | X-ray diffraction | 3.54 | 2014-07-09 |
50 | 4V6E|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 |
51 | 4V9O|1|GB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Control of ribosomal subunit rotation by elongation factor G | X-ray diffraction | 2.9 | 2014-07-09 |
52 | 4U27|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-ray diffraction | 2.8 | 2014-07-30 |
53 | 4V56|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | X-ray diffraction | 3.93 | 2014-07-09 |
54 | 4V55|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | X-ray diffraction | 4 | 2014-07-09 |
55 | 4WF1|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to negamycin. | X-ray diffraction | 3.09 | 2014-11-05 |
56 | 5J88|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-ray diffraction | 3.32 | 2016-07-06 |
57 | 4U25|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-ray diffraction | 2.9 | 2014-07-30 |
58 | 4V4Q|1|BA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
59 | 4U1V|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to linopristin. | X-ray diffraction | 3 | 2014-07-30 |
60 | 4V55|1|DA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | X-ray diffraction | 4 | 2014-07-09 |
61 | 4V50|1|BA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-ray diffraction | 3.22 | 2014-07-09 |
62 | 4V56|1|BA | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | X-ray diffraction | 3.93 | 2014-07-09 |
63 | 4V89|1|BB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) | X-ray diffraction | 3.7 | 2014-07-09 |
64 | 4V4Q|1|DA | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
65 | 4YBB|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
66 | 4U26|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-ray diffraction | 2.8 | 2014-07-30 |
67 | 4U1U|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to quinupristin. | X-ray diffraction | 2.95 | 2014-07-30 |
68 | 4V9C|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
69 | 4V7T|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-ray diffraction | 3.19 | 2014-07-09 |
70 | 4U20|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to flopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
71 | 5IT8|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 3.12 | 2016-07-27 |
72 | 4U24|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-ray diffraction | 2.9 | 2014-07-30 |
73 | 4WWW|1|YB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to CEM-101 | X-ray diffraction | 3.1 | 2014-12-24 |
74 | 5J91|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-ray diffraction | 2.96 | 2016-07-06 |
75 | 4V6C|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.19 | 2014-07-09 |
76 | 4V6D|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.81 | 2014-07-09 |
77 | 4V7V|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to clindamycin. | X-ray diffraction | 3.29 | 2014-07-09 |
78 | 4V7S|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to telithromycin. | X-ray diffraction | 3.25 | 2014-07-09 |
79 | 4V7U|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli ribosome bound to erythromycin. | X-ray diffraction | 3.1 | 2014-07-09 |
80 | 4V6E|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 |
81 | 4V5B|1|CA | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Structure of PDF binding helix in complex with the ribosome | X-ray diffraction | 3.74 | 2014-07-09 |
82 | 4V5B|1|AA | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Structure of PDF binding helix in complex with the ribosome | X-ray diffraction | 3.74 | 2014-07-09 |
83 | 5J5B|1|DB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
84 | 4V4H|1|BA | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
85 | 4V4H|1|DA | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-ray diffraction | 3.46 | 2014-07-09 |
86 | 5J5B|1|CB | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the WT E coli ribosome bound to tetracycline | X-ray diffraction | 2.8 | 2016-07-27 |
87 | 5AFI|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
88 | 5NWY|1|O | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | Electron microscopy | 2.9 | 2017-07-19 |
89 | 5MDV|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | Electron microscopy | 2.97 | 2016-12-14 |
90 | 5H5U|1|B | 5S ribosomal RNA | 5S Ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Mechanistic insights into the alternative translation termination by ArfA and RF2 | Electron microscopy | 3.01 | 2017-01-25 |
91 | 5MDZ|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S ribosome (empty A site) | Electron microscopy | 3.1 | 2016-12-14 |
92 | 6ENU|1|B | 5S ribosomal RNA | 5S Ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | Electron microscopy | 3.1 | 2017-11-22 |
93 | 5MDW|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.06 | 2016-12-14 |
94 | 5MGP|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
95 | 6ENF|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | Electron microscopy | 3.2 | 2017-11-22 |
96 | 5U9G|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | Electron microscopy | 3.2 | 2017-03-22 |
97 | 5U9F|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | Electron microscopy | 3.2 | 2017-03-22 |
98 | 5UYM|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
99 | 6C4I|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | Electron microscopy | 3.24 | 2018-02-21 |
100 | 4V80|1|BB | 5S rRNA | Crystal structure of the E. coli ribosome bound to CEM-101. | X-ray diffraction | 3.3 | 2014-07-09 | ||||
101 | 4V80|1|DB | 5S rRNA | Crystal structure of the E. coli ribosome bound to CEM-101. | X-ray diffraction | 3.3 | 2014-07-09 | ||||
102 | 3JBV|1|a | 5S ribosomal RNA | RNA (118-MER) | Escherichia coli | Bacteria | RF00001 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
103 | 5GAE|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | RNC in complex with a translocating SecYEG | Electron microscopy | 3.33 | 2016-01-27 |
104 | 5MDY|1|3 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | Electron microscopy | 3.35 | 2016-12-21 |
105 | 5LZD|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 |
106 | 3JCE|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 |
107 | 5O2R|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome | Electron microscopy | 3.4 | 2017-07-26 |
108 | 5LZE|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | Electron microscopy | 3.5 | 2016-11-23 |
109 | 6BU8|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome with S1 domains 1 and 2 (Class 1) | Electron microscopy | 3.5 | 2018-01-31 |
110 | 5U4I|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | Electron microscopy | 3.5 | 2017-01-11 |
111 | 5KCR|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | Electron microscopy | 3.6 | 2016-08-17 |
112 | 5LZA|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) | Electron microscopy | 3.6 | 2016-11-23 |
113 | 5UYL|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | Electron microscopy | 3.6 | 2017-06-14 |
114 | 5IQR|1|3 | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
115 | 6ENJ|1|B | 5S ribosomal RNA | 5S Ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
116 | 3JBU|1|a | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.64 | 2016-01-27 |
117 | 5L3P|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex | Electron microscopy | 3.7 | 2016-07-20 |
118 | 5GAD|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | RNC-SRP-SR complex early state | Electron microscopy | 3.7 | 2016-01-27 |
119 | 3J9Z|1|LB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
120 | 5JU8|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA | Electron microscopy | 3.6 | 2016-07-20 |
121 | 5JTE|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | Electron microscopy | 3.6 | 2016-07-20 |
122 | 3JCJ|1|0 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | Electron microscopy | 3.7 | 2016-03-09 |
123 | 5UYQ|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | Electron microscopy | 3.8 | 2017-06-07 |
124 | 5GAH|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | RNC in complex with SRP with detached NG domain | Electron microscopy | 3.8 | 2016-01-27 |
125 | 5GAG|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | RNC in complex with SRP-SR in the closed state | Electron microscopy | 3.8 | 2016-01-27 |
126 | 5UYP|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | Electron microscopy | 3.9 | 2017-06-07 |
127 | 3J9Y|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome | Electron microscopy | 3.9 | 2015-04-15 |
128 | 5KPW|1|28 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | Electron microscopy | 3.9 | 2016-09-28 |
129 | 5UYK|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | Electron microscopy | 3.9 | 2017-06-07 |
130 | 5KPX|1|28 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | Electron microscopy | 3.9 | 2016-09-28 |
131 | 3JCD|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | Electron microscopy | 3.7 | 2016-01-13 |
132 | 5KPS|1|29 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | Electron microscopy | 3.9 | 2016-09-28 |
133 | 5KCS|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution | Electron microscopy | 3.9 | 2016-08-17 |
134 | 5UYN|1|02 | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | Electron microscopy | 4 | 2017-06-07 |
135 | 4UY8|1|B | 5S ribosomal RNA | RRNA-5S RIBOSOMAL RNA | Escherichia coli | Bacteria | RF00001 | Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome | Electron microscopy | 3.8 | 2014-10-29 |
136 | 5NP6|1|Z | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | 70S structure prior to bypassing | Electron microscopy | 3.6 | 2017-06-14 |
137 | 3J7Z|1|B | 5S ribosomal RNA | 5S rRNA | Escherichia coli | Bacteria | RF00001 | Structure of the E. coli 50S subunit with ErmCL nascent chain | Electron microscopy | 3.9 | 2014-10-22 |
138 | 3JA1|1|LB | 5S ribosomal RNA | 5S ribosomal RNA | Escherichia coli | Bacteria | RF00001 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
Release history
Parents
Children
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 4V9O|1|GB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
2 | 4V9P|1|GB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
3 | 5U4I|1|B | Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome | ELECTRON MICROSCOPY | 3.5 | 118 | |
4 | 3JCD|1|B | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | ELECTRON MICROSCOPY | 3.7 | 118 | |
5 | 3JCE|1|B | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 118 | |
6 | 5NP6|1|Z | 70S structure prior to bypassing | ELECTRON MICROSCOPY | 3.6 | 120 | |
7 | 5O2R|1|B | Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome | ELECTRON MICROSCOPY | 3.4 | 120 | |
8 | 6ENJ|1|B | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 120 | |
9 | 6ENU|1|B | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.1 | 120 | |
10 | 6ENF|1|B | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | ELECTRON MICROSCOPY | 3.2 | 120 | |
11 | 5LZD|1|B | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | ELECTRON MICROSCOPY | 3.4 | 120 | |
12 | 5H5U|1|B | Mechanistic insights into the alternative translation termination by ArfA and RF2 | ELECTRON MICROSCOPY | 3.01 | 120 | |
13 | 5GAG|1|B | RNC in complex with SRP-SR in the closed state | ELECTRON MICROSCOPY | 3.8 | 120 | |
14 | 5GAH|1|B | RNC in complex with SRP with detached NG domain | ELECTRON MICROSCOPY | 3.8 | 120 | |
15 | 5GAD|1|B | RNC-SRP-SR complex early state | ELECTRON MICROSCOPY | 3.7 | 120 | |
16 | 5LZE|1|B | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | ELECTRON MICROSCOPY | 3.5 | 120 | |
17 | 5LZA|1|B | Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC) | ELECTRON MICROSCOPY | 3.6 | 120 | |
18 | 5KPX|1|28 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | ELECTRON MICROSCOPY | 3.9 | 120 | |
19 | 5KPS|1|29 | Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I) | ELECTRON MICROSCOPY | 3.9 | 120 | |
20 | 5KPW|1|28 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | ELECTRON MICROSCOPY | 3.9 | 120 | |
21 | 5MGP|1|B | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 120 | |
22 | 5AFI|1|B | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 120 | |
23 | 3J9Y|1|B | Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome | ELECTRON MICROSCOPY | 3.9 | 120 | |
24 | 5KCS|1|1B | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution | ELECTRON MICROSCOPY | 3.9 | 120 | |
25 | 5L3P|1|B | Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex | ELECTRON MICROSCOPY | 3.7 | 120 | |
26 | 5UYM|1|02 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | ELECTRON MICROSCOPY | 3.2 | 120 | |
27 | 6BU8|1|02 | 70S ribosome with S1 domains 1 and 2 (Class 1) | ELECTRON MICROSCOPY | 3.5 | 120 | |
28 | 5UYL|1|02 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | ELECTRON MICROSCOPY | 3.6 | 120 | |
29 | 5UYK|1|02 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | ELECTRON MICROSCOPY | 3.9 | 120 | |
30 | 5UYP|1|02 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc) | ELECTRON MICROSCOPY | 3.9 | 120 | |
31 | 5UYN|1|02 | 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc) | ELECTRON MICROSCOPY | 4 | 120 | |
32 | 5UYQ|1|02 | 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc) | ELECTRON MICROSCOPY | 3.8 | 120 | |
33 | 5U9F|1|02 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) | ELECTRON MICROSCOPY | 3.2 | 119 | |
34 | 5U9G|1|02 | 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I) | ELECTRON MICROSCOPY | 3.2 | 119 | |
35 | 4V7U|1|DB | Crystal structure of the E. coli ribosome bound to erythromycin. | X-RAY DIFFRACTION | 3.1 | 117 | |
36 | 4V7V|1|DB | Crystal structure of the E. coli ribosome bound to clindamycin. | X-RAY DIFFRACTION | 3.29 | 117 | |
37 | 4V7T|1|DB | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-RAY DIFFRACTION | 3.19 | 117 | |
38 | 4V6C|1|DB | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.19 | 117 | |
39 | 4V7S|1|DB | Crystal structure of the E. coli ribosome bound to telithromycin. | X-RAY DIFFRACTION | 3.25 | 117 | |
40 | 4V80|1|DB | Crystal structure of the E. coli ribosome bound to CEM-101. | X-RAY DIFFRACTION | 3.3 | 117 | |
41 | 4WWW|1|YB | Crystal structure of the E. coli ribosome bound to CEM-101 | X-RAY DIFFRACTION | 3.1 | 117 | |
42 | 4V6E|1|DB | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 117 | |
43 | 4V6D|1|DB | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.81 | 117 | |
44 | 4WOI|1|CB | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 118 | |
45 | 4V9C|1|BB | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 118 | |
46 | 4V9D|1|DB | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 118 | |
47 | 4U1U|1|DB | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 118 | |
48 | 4U20|1|DB | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 118 | |
49 | 4U1V|1|DB | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 118 | |
50 | 4WF1|1|DB | Crystal structure of the E. coli ribosome bound to negamycin. | X-RAY DIFFRACTION | 3.09 | 118 | |
51 | 4U27|1|DB | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 118 | |
52 | 4U25|1|DB | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 118 | |
53 | 4U24|1|DB | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 118 | |
54 | 4U26|1|DB | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 118 | |
55 | 4YBB|1|CB | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 118 | |
56 | 5JU8|1|BB | Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA | ELECTRON MICROSCOPY | 3.6 | 118 | |
57 | 5JTE|1|BB | Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA | ELECTRON MICROSCOPY | 3.6 | 118 | |
58 | 5J88|1|CB | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 118 | |
59 | 5IT8|1|CB | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 3.12 | 118 | |
60 | 5J5B|1|CB | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 118 | |
61 | 5J91|1|CB | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 118 | |
62 | 5J8A|1|CB | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-RAY DIFFRACTION | 3.1 | 118 | |
63 | 5J7L|1|CB | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 118 | |
64 | 5JC9|1|CB | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-RAY DIFFRACTION | 3.03 | 118 | |
65 | 5NWY|1|O | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 118 | |
66 | 5MDY|1|3 | Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.35 | 120 | |
67 | 5MDV|1|3 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 120 | |
68 | 5MDZ|1|3 | Structure of the 70S ribosome (empty A site) | ELECTRON MICROSCOPY | 3.1 | 120 | |
69 | 5MDW|1|3 | Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state) | ELECTRON MICROSCOPY | 3.06 | 120 | |
70 | 6C4I|1|B | Conformation of methylated GGQ in the peptidyl transferase center during translation termination | ELECTRON MICROSCOPY | 3.24 | 120 | |
71 | 5IQR|1|3 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 118 | |
72 | 4V9O|1|EB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
73 | 4V9P|1|EB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
74 | 3JCJ|1|0 | Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association | ELECTRON MICROSCOPY | 3.7 | 118 | |
75 | 4V9O|1|AB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
76 | 4UY8|1|B | Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome | ELECTRON MICROSCOPY | 3.8 | 118 | |
77 | 3J7Z|1|B | Structure of the E. coli 50S subunit with ErmCL nascent chain | ELECTRON MICROSCOPY | 3.9 | 118 | |
78 | 4V9O|1|CB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
79 | 4V9P|1|CB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
80 | 4V9P|1|AB | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 118 | |
81 | 4V89|1|BB | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin) | X-RAY DIFFRACTION | 3.7 | 118 | |
82 | 4V85|1|BB | Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome. | X-RAY DIFFRACTION | 3.2 | 118 | |
83 | 4V6D|1|BB | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.81 | 118 | |
84 | 4V6E|1|BB | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 118 | |
85 | 4V7U|1|BB | Crystal structure of the E. coli ribosome bound to erythromycin. | X-RAY DIFFRACTION | 3.1 | 118 | |
86 | 4V7V|1|BB | Crystal structure of the E. coli ribosome bound to clindamycin. | X-RAY DIFFRACTION | 3.29 | 118 | |
87 | 4V7T|1|BB | Crystal structure of the E. coli ribosome bound to chloramphenicol. | X-RAY DIFFRACTION | 3.19 | 118 | |
88 | 4V6C|1|BB | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.19 | 118 | |
89 | 4V80|1|BB | Crystal structure of the E. coli ribosome bound to CEM-101. | X-RAY DIFFRACTION | 3.3 | 118 | |
90 | 4WWW|1|RB | Crystal structure of the E. coli ribosome bound to CEM-101 | X-RAY DIFFRACTION | 3.1 | 118 | |
91 | 4V7S|1|BB | Crystal structure of the E. coli ribosome bound to telithromycin. | X-RAY DIFFRACTION | 3.25 | 118 | |
92 | 4U24|1|BB | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 119 | |
93 | 4U26|1|BB | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 119 | |
94 | 4U27|1|BB | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 119 | |
95 | 4U25|1|BB | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 119 | |
96 | 4WF1|1|BB | Crystal structure of the E. coli ribosome bound to negamycin. | X-RAY DIFFRACTION | 3.09 | 119 | |
97 | 4U1U|1|BB | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 119 | |
98 | 4U20|1|BB | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 119 | |
99 | 4U1V|1|BB | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 119 | |
100 | 4WOI|1|BB | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 119 | |
101 | 4V9C|1|DB | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 119 | |
102 | 4V9D|1|CB | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 119 | |
103 | 4YBB|1|DB | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 120 | |
104 | 5KCR|1|1B | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | ELECTRON MICROSCOPY | 3.6 | 120 | |
105 | 5J91|1|DB | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 120 | |
106 | 5J5B|1|DB | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 120 | |
107 | 5J8A|1|DB | Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline | X-RAY DIFFRACTION | 3.1 | 120 | |
108 | 5J7L|1|DB | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 120 | |
109 | 5JC9|1|DB | Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA | X-RAY DIFFRACTION | 3.03 | 120 | |
110 | 5IT8|1|DB | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 3.12 | 120 | |
111 | 5J88|1|DB | Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA | X-RAY DIFFRACTION | 3.32 | 120 | |
112 | 5GAE|1|B | RNC in complex with a translocating SecYEG | ELECTRON MICROSCOPY | 3.33 | 120 | |
113 | 3J9Z|1|LB | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 120 | |
114 | 3JA1|1|LB | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 120 | |
115 | 4V56|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | X-RAY DIFFRACTION | 3.93 | 117 | |
116 | 4V56|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | X-RAY DIFFRACTION | 3.93 | 117 | |
117 | 4V64|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-RAY DIFFRACTION | 3.5 | 117 | |
118 | 4V53|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | X-RAY DIFFRACTION | 3.54 | 117 | |
119 | 4V55|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 4 | 117 | |
120 | 4V54|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 3.3 | 117 | |
121 | 4V52|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-RAY DIFFRACTION | 3.21 | 117 | |
122 | 4V57|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-RAY DIFFRACTION | 3.5 | 117 | |
123 | 4V57|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | X-RAY DIFFRACTION | 3.5 | 117 | |
124 | 4V52|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. | X-RAY DIFFRACTION | 3.21 | 117 | |
125 | 4V53|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. | X-RAY DIFFRACTION | 3.54 | 117 | |
126 | 4V55|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 4 | 117 | |
127 | 4V64|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B. | X-RAY DIFFRACTION | 3.5 | 117 | |
128 | 4V54|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). | X-RAY DIFFRACTION | 3.3 | 117 | |
129 | 4V50|1|BA | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 117 | |
130 | 4V50|1|DA | Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. | X-RAY DIFFRACTION | 3.22 | 117 | |
131 | 4V4Q|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | |
132 | 4V4H|1|BA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | |
133 | 4V5B|1|AA | Structure of PDF binding helix in complex with the ribosome | X-RAY DIFFRACTION | 3.74 | 117 | |
134 | 4V5B|1|CA | Structure of PDF binding helix in complex with the ribosome | X-RAY DIFFRACTION | 3.74 | 117 | |
135 | 4V4Q|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | |
136 | 4V4H|1|DA | Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. | X-RAY DIFFRACTION | 3.46 | 117 | |
137 | 3JBV|1|a | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | ELECTRON MICROSCOPY | 3.32 | 117 | |
138 | 3JBU|1|a | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | ELECTRON MICROSCOPY | 3.64 | 118 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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