#IFECompound(s)RNA source organismTitleMethodResolutionDate
16R5Q|1|7 (rep)5S rRNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
26R6P|1|75S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
36D9J|1|75S rRNAOryctolagus cuniculusMammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
45LZS|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
55LZV|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
66MTD|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
71VWY|1|75S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
81VWW|1|75S ribosomal RNAStructure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
93J71|1|75S ribosomal RNAStructure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.42014-06-18
103J72|1|75S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.42014-06-18
116MTE|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
121VX3|1|75S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.52014-06-18
133J74|1|75S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.52014-06-18
145LZZ|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
156MTC|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
165LZW|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.532016-11-30
176D90|1|75S rRNAOryctolagus cuniculusMammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
185LZT|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.652016-11-30
195LZX|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.672016-11-30
206GZ5|1|A45S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
216MTB|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.62018-11-21
226GZ3|1|A45S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
236FRK|1|75S ribosomal RNAOryctolagus cuniculusStructure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.72018-03-28
245LZU|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.752016-11-30
256R6G|1|75S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.72019-07-10
266GZ4|1|A45S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.62018-12-05
276HCJ|1|715S ribosomal RNAOryctolagus cuniculusStructure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.82018-10-17
283JAH|1|75S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12
296R7Q|1|75S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.92019-07-10
301VX0|1|75S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.92014-06-18
313J73|1|75S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.92014-06-18
323J92|1|75S rRNAOryctolagus cuniculusStructure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.62015-01-21
335LZY|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.992016-11-30
343JAG|1|75S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.652015-08-12
353JAI|1|75S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.652015-08-12
366HCF|1|725S ribosomal RNAOryctolagus cuniculusStructure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.92018-10-17
373JAN|1|75S ribosomal RNAOryctolagus cuniculusStructure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
383JAJ|1|75S ribosomal RNAOryctolagus cuniculusStructure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05

Release history

Release3.823.833.843.853.863.873.883.893.90
Date2019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16HCJ|1|71Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.8120
26HCF|1|72Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.9120
36D9J|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.2119
43J72|1|7Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.4120
51VWY|1|7Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.4120
61VWW|1|7Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.4120
73J71|1|7Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.4120
83J74|1|7Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.5120
91VX3|1|7Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.5120
103J73|1|7Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.9120
111VX0|1|7Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.9120
126D90|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.2119
136GZ4|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.6119
146GZ5|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.5119
156GZ3|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.6119
166R6P|1|7Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.1120
176R6G|1|7Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.7120
186R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
196R7Q|1|7Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.9120
206MTE|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.4120
216MTD|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.3120
226MTB|1|7Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.6120
236MTC|1|7Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.4120
245LZS|1|7Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.31119
255LZU|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.75120
265LZV|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.35120
275LZT|1|7Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.65120
285LZW|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.53120
295LZX|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.67120
305LZZ|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.47120
315LZY|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.99120
323JAH|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.45120
333JAG|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.65120
343JAI|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.65120
353J92|1|7Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.6120
366FRK|1|7Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.7120
373JAJ|1|7Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.75120
383JAN|1|7Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.75120