NR_4.0_12763.19

Members (43)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7OF0\|1\|A (rep)	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).	Electron microscopy	2.2	2021-06-09
2	6ZM6\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	2021-01-13
3	7O9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module	Electron microscopy	2.5	2021-06-30
4	7OF6\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).	Electron microscopy	2.6	2021-06-09
5	7OF4\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).	Electron microscopy	2.7	2021-06-09
6	6ZM5\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	2021-01-13
7	7OF7\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).	Electron microscopy	2.5	2021-06-23
8	6VMI\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	2020-08-05
9	6VLZ\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	2020-08-05
10	7OF2\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.	Electron microscopy	2.7	2021-06-02
11	7OF3\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).	Electron microscopy	2.7	2021-05-19
12	7L20\|1\|A	Large subunit ribosomal RNA	16S rRNA mitochondrial	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	Electron microscopy	3.15	2021-05-12
13	7ODR\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State A of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	2.9	2021-06-23
14	7A5J\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	Electron microscopy	3.1	2020-12-23
15	7OF5\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).	Electron microscopy	2.9	2021-06-09
16	7ODT\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State C of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	3.1	2021-06-23
17	7O9K\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu	Electron microscopy	3.1	2021-06-30
18	5OOL\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.06	2017-09-13
19	7ODS\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State B of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	3.1	2021-06-23
20	7OIC\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4	Electron microscopy	3.1	2021-09-15
21	7A5H\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	Electron microscopy	3.3	2020-12-23
22	7L08\|1\|A	Large subunit ribosomal RNA	16S RRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	2021-05-12
23	7OIE\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B	Electron microscopy	3.5	2021-09-15
24	6ZSC\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	2020-09-16
25	7A5K\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	Electron microscopy	3.7	2020-12-23
26	7A5I\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	Electron microscopy	3.7	2020-12-23
27	7OID\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A	Electron microscopy	3.7	2021-09-15
28	6ZSD\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	Electron microscopy	3.7	2020-09-16
29	7PD3\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP	Electron microscopy	3.4	2021-11-17
30	7OG4\|1\|XA	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with P/E-tRNA	Electron microscopy	3.8	2021-06-23
31	3J9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	2015-04-15
32	6I9R\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	Electron microscopy	3.9	2020-07-08
33	5OOM\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.03	2017-09-13
34	6ZSG\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	Electron microscopy	4	2020-10-14
35	6ZSA\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	Electron microscopy	4	2020-10-21
36	6ZS9\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with ribosome recycling factor	Electron microscopy	4	2020-10-14
37	7OIA\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C	Electron microscopy	3.2	2021-09-15
38	3J7Y\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the large ribosomal subunit from human mitochondria	Electron microscopy	3.4	2014-10-15
39	7OIB\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D	Electron microscopy	3.3	2021-09-15
40	7OI9\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B	Electron microscopy	3.3	2021-09-15
41	6NU2\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	3.9	2019-04-17
42	7OI8\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A	Electron microscopy	3.5	2021-09-15
43	7OI7\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2	Electron microscopy	3.5	2021-09-15

Release history

Release	3.205	3.206	3.207	3.208	3.209	3.210	3.211	3.212	3.213	3.214	3.215	3.216	3.217	3.218	3.219
Date	2021-11-17	2021-11-24	2021-12-01	2021-12-08	2021-12-15	2021-12-22	2021-12-29	2022-01-05	2022-01-12	2022-01-19	2022-01-26	2022-02-02	2022-02-09	2022-02-16	2022-02-23

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_12763.19	NR_4.0_12763.18	3.205	(42) 3J7Y\|1\|A, 3J9M\|1\|A, 5OOL\|1\|A, 5OOM\|1\|A, 6I9R\|1\|A, 6NU2\|1\|A, 6VLZ\|1\|A, 6VMI\|1\|A, 6ZM5\|1\|A, 6ZM6\|1\|A, 6ZS9\|1\|XA, 6ZSA\|1\|XA, 6ZSC\|1\|XA, 6ZSD\|1\|XA, 6ZSG\|1\|XA, 7A5H\|1\|A, 7A5I\|1\|A3, 7A5J\|1\|A, 7A5K\|1\|A3, 7L08\|1\|A, 7L20\|1\|A, 7O9K\|1\|A, 7O9M\|1\|A, 7ODR\|1\|A, 7ODS\|1\|A, 7ODT\|1\|A, 7OF0\|1\|A, 7OF2\|1\|A, 7OF3\|1\|A, 7OF4\|1\|A, 7OF5\|1\|A, 7OF6\|1\|A, 7OF7\|1\|A, 7OG4\|1\|XA, 7OI7\|1\|A, 7OI8\|1\|A, 7OI9\|1\|A, 7OIA\|1\|A, 7OIB\|1\|A, 7OIC\|1\|A, 7OID\|1\|A, 7OIE\|1\|A	(1) 7PD3\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_12763.19	NR_4.0_12763.20	3.220	(43) 3J7Y\|1\|A, 3J9M\|1\|A, 5OOL\|1\|A, 5OOM\|1\|A, 6I9R\|1\|A, 6NU2\|1\|A, 6VLZ\|1\|A, 6VMI\|1\|A, 6ZM5\|1\|A, 6ZM6\|1\|A, 6ZS9\|1\|XA, 6ZSA\|1\|XA, 6ZSC\|1\|XA, 6ZSD\|1\|XA, 6ZSG\|1\|XA, 7A5H\|1\|A, 7A5I\|1\|A3, 7A5J\|1\|A, 7A5K\|1\|A3, 7L08\|1\|A, 7L20\|1\|A, 7O9K\|1\|A, 7O9M\|1\|A, 7ODR\|1\|A, 7ODS\|1\|A, 7ODT\|1\|A, 7OF0\|1\|A, 7OF2\|1\|A, 7OF3\|1\|A, 7OF4\|1\|A, 7OF5\|1\|A, 7OF6\|1\|A, 7OF7\|1\|A, 7OG4\|1\|XA, 7OI7\|1\|A, 7OI8\|1\|A, 7OI9\|1\|A, 7OIA\|1\|A, 7OIB\|1\|A, 7OIC\|1\|A, 7OID\|1\|A, 7OIE\|1\|A, 7PD3\|1\|A	(0)	(1) 7QH6\|1\|A

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	6NU2\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	3.9	1472
2	6VMI\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	1527
3	6VLZ\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	1527
4	7L08\|1\|A	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	1527
5	7L20\|1\|A	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	ELECTRON MICROSCOPY	3.15	1527
6	7OIC\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4	ELECTRON MICROSCOPY	3.1	1385
7	7OID\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A	ELECTRON MICROSCOPY	3.7	1472
8	7OIE\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B	ELECTRON MICROSCOPY	3.5	1472
9	3J9M\|1\|A	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	1472
10	3J7Y\|1\|A	Structure of the large ribosomal subunit from human mitochondria	ELECTRON MICROSCOPY	3.4	1473
11	7A5I\|1\|A3	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.7	1485
12	7A5K\|1\|A3	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	ELECTRON MICROSCOPY	3.7	1503
13	7A5J\|1\|A	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.1	1492
14	5OOL\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.06	1441
15	7A5H\|1\|A	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	ELECTRON MICROSCOPY	3.3	1457
16	6I9R\|1\|A	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	ELECTRON MICROSCOPY	3.9	1498
17	6ZSG\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	4	1501
18	6ZSA\|1\|XA	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	ELECTRON MICROSCOPY	4	1501
19	6ZSD\|1\|XA	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	3.7	1501
20	6ZSC\|1\|XA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	1501
21	7OG4\|1\|XA	Human mitochondrial ribosome in complex with P/E-tRNA	ELECTRON MICROSCOPY	3.8	1498
22	6ZS9\|1\|XA	Human mitochondrial ribosome in complex with ribosome recycling factor	ELECTRON MICROSCOPY	4	1501
23	6ZM6\|1\|A	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	1531
24	6ZM5\|1\|A	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	1534
25	7OF6\|1\|A	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).	ELECTRON MICROSCOPY	2.6	1460
26	7OF4\|1\|A	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).	ELECTRON MICROSCOPY	2.7	1460
27	7OF2\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.	ELECTRON MICROSCOPY	2.7	1407
28	7ODT\|1\|A	State C of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	3.1	1451
29	7OF5\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).	ELECTRON MICROSCOPY	2.9	1386
30	7OF7\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).	ELECTRON MICROSCOPY	2.5	1373
31	7OF0\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).	ELECTRON MICROSCOPY	2.2	1376
32	7OF3\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).	ELECTRON MICROSCOPY	2.7	1386
33	7ODR\|1\|A	State A of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	2.9	1417
34	7ODS\|1\|A	State B of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	3.1	1414
35	7O9M\|1\|A	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module	ELECTRON MICROSCOPY	2.5	1453
36	5OOM\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.03	1092
37	7OIB\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D	ELECTRON MICROSCOPY	3.3	1092
38	7OIA\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C	ELECTRON MICROSCOPY	3.2	1092
39	7OI8\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A	ELECTRON MICROSCOPY	3.5	1092
40	7OI9\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B	ELECTRON MICROSCOPY	3.3	1092
41	7OI7\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2	ELECTRON MICROSCOPY	3.5	1054
42	7PD3\|1\|A	Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP	ELECTRON MICROSCOPY	3.4	1363
43	7O9K\|1\|A	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu	ELECTRON MICROSCOPY	3.1	1435

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_12763.19 Obsolete

Release history

Parents

Children