#IFECompound(s)RNA source organismTitleMethodResolutionDate
17OF0|1|A (rep)16S ribosomal RNAStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.22021-06-09
26ZM6|1|A16S mitochondrial rRNAHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.592021-01-13
37O9M|1|A16S rRNAHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.52021-06-30
47OF6|1|A16S ribosomal RNAStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.62021-06-09
57OF4|1|A16S ribosomal RNAStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.72021-06-09
66ZM5|1|A16S mitochondrial rRNAHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.892021-01-13
77OF7|1|A16S ribosomal RNAStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.52021-06-23
86VMI|1|A16s rRNAHomo sapiensStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.962020-08-05
96VLZ|1|A16s rRNAHomo sapiensStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.972020-08-05
107OF2|1|A16S ribosomal RNAStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.72021-06-02
117OF3|1|A16S ribosomal RNAStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.72021-05-19
127L20|1|A16S rRNA mitochondrialCryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.152021-05-12
137ODR|1|A16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNAState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.92021-06-23
147A5J|1|A16S rRNAStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.12020-12-23
157OF5|1|A16S ribosomal RNAStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.92021-06-09
167ODT|1|A16S mitochondrial rRNAState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.12021-06-23
177O9K|1|A16S rRNAHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.12021-06-30
185OOL|1|A16S ribosomal RNAHomo sapiensStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.062017-09-13
197ODS|1|A16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNAState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.12021-06-23
207OIC|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.12021-09-15
217A5H|1|A16S rRNAStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.32020-12-23
227L08|1|A16S RRNACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.492021-05-12
237OIE|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.52021-09-15
246ZSC|1|XA16S rRNAHomo sapiensHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.52020-09-16
257A5K|1|A316S rRNAStructure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.72020-12-23
267A5I|1|A316S rRNAStructure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.72020-12-23
277OID|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AELECTRON MICROSCOPY3.72021-09-15
286ZSD|1|XA16S rRNAHomo sapiensHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.72020-09-16
297PD3|1|A16S rRNAStructure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPELECTRON MICROSCOPY3.42021-11-17
307OG4|1|XA16S mitochondrial rRNAHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.82021-06-23
317QH6|1|A16S ribosomal RNACryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.082022-03-02
323J9M|1|A16S rRNAHomo sapiensStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.52015-04-15
336I9R|1|A16S rRNAHomo sapiensLarge subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.92020-07-08
345OOM|1|A16S ribosomal RNAHomo sapiensStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.032017-09-13
356ZSG|1|XA16S rRNAHomo sapiensHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY42020-10-14
366ZSA|1|XA16S rRNAHomo sapiensHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY42020-10-21
376ZS9|1|XA16S rRNAHomo sapiensHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY42020-10-14
387OIA|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.22021-09-15
393J7Y|1|A16S rRNAHomo sapiensStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.42014-10-15
407OIB|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.32021-09-15
417OI9|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.32021-09-15
426NU2|1|A16S rRNAHomo sapiensStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.92019-04-17
437OI8|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.52021-09-15
447OI7|1|A16S rRNACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.52021-09-15

Release history

Release3.220
Date2022-03-02

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16NU2|1|AStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.91472
26VMI|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.961527
36VLZ|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.971527
47L08|1|ACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.491527
57L20|1|ACryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.ELECTRON MICROSCOPY3.151527
63J7Y|1|AStructure of the large ribosomal subunit from human mitochondriaELECTRON MICROSCOPY3.41473
73J9M|1|AStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.51472
87A5I|1|A3Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.71485
97A5K|1|A3Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.71503
107A5H|1|AStructure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1ELECTRON MICROSCOPY3.31457
115OOL|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.061441
127A5J|1|AStructure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAsELECTRON MICROSCOPY3.11492
137OIC|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4ELECTRON MICROSCOPY3.11385
147OID|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5AELECTRON MICROSCOPY3.71472
157OIE|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5BELECTRON MICROSCOPY3.51472
166I9R|1|ALarge subunit of the human mitochondrial ribosome in complex with Virginiamycin M and QuinupristinELECTRON MICROSCOPY3.91498
176ZS9|1|XAHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY41501
186ZSD|1|XAHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.71501
196ZSC|1|XAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.51501
207OG4|1|XAHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.81498
216ZSA|1|XAHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY41501
226ZSG|1|XAHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY41501
236ZM5|1|AHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.891534
246ZM6|1|AHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.591531
257OF6|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.61460
267OF4|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.71460
277OF2|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.71407
287ODT|1|AState C of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11451
297OF5|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.91386
307OF7|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.51373
317OF0|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.21376
327OF3|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.71386
337ODR|1|AState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.91417
347ODS|1|AState B of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY3.11414
357O9M|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.51453
367OI7|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2ELECTRON MICROSCOPY3.51054
377OI9|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3BELECTRON MICROSCOPY3.31092
387OI8|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3AELECTRON MICROSCOPY3.51092
397OIA|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3CELECTRON MICROSCOPY3.21092
407OIB|1|ACryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3DELECTRON MICROSCOPY3.31092
415OOM|1|AStructure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNAELECTRON MICROSCOPY3.031092
427QH6|1|ACryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1ELECTRON MICROSCOPY3.081133
437PD3|1|AStructure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACPELECTRON MICROSCOPY3.41363
447O9K|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-TuELECTRON MICROSCOPY3.11435