Equivalence class NR_4.0_14145.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WRT|1|V+ 4WRT|1|R (rep) | Influenza virus polymerase vRNA promoter 3' end, Influenza virus polymerase vRNA promoter 5' end | Influenza B virus | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-ray diffraction | 2.7 | 2014-11-19 | |||
| 2 | 6QCW|1|V+ 6QCW|1|R+ 6QCW|1|M | RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-ray diffraction | 2.88 | 2019-06-05 | |||
| 3 | 6QCX|1|V+ 6QCX|1|R+ 6QCX|1|M | RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-ray diffraction | 3.08 | 2019-06-05 | |||
| 4 | 7Z43|1|VVV+ 7Z43|1|RRR | RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | Influenza B virus | Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B | X-ray diffraction | 3.123 | 2022-05-11 | |||
| 5 | 6QCV|1|V+ 6QCV|1|R+ 6QCV|1|M | RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-ray diffraction | 3.24 | 2019-06-05 | |||
| 6 | 4WSA|1|V+ 4WSA|1|R | Influenza B vRNA promoter 3' end, Influenza B vRNA promoter 5' end | Influenza B virus | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-ray diffraction | 3.4 | 2014-11-19 | |||
| 7 | 5M3J|1|V+ 5M3J|1|R | RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | Influenza B virus | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-ray diffraction | 3.5 | 2016-12-21 | |||
| 8 | 5MSG|1|V+ 5MSG|1|R | RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') | Influenza B virus | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-ray diffraction | 3.8 | 2017-02-08 | |||
| 9 | 7R0E|1|V+ 7R0E|1|R+ 7R0E|1|M | 3' vRNA, 5' vRNA, mRNA | Influenza A virus | Early transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 position | Electron microscopy | 2.51 | 2022-12-28 | |||
| 10 | 6T0N|1|V+ 6T0N|1|R | 3' vRNA, 5' vRNA | Influenza B virus | Bat Influenza A polymerase pre-initiation complex | Electron microscopy | 2.54 | 2020-04-15 | |||
| 11 | 6SZV|1|V | 5' vRNA | Influenza B virus | Bat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only) | Electron microscopy | 2.5 | 2020-04-15 | |||
| 12 | 8BEK|1|V+ 8BEK|1|R+ 8BEK|1|M | 3' vRNA, 5' vRNA, mRNA | Influenza A virus | Early transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 position | Electron microscopy | 2.86 | 2022-12-28 | |||
| 13 | 7QTL|1|V | 5' vRNA | Influenza A virus | Influenza A/H7N9 polymerase elongation complex | Electron microscopy | 2.48 | 2022-12-28 | |||
| 14 | 7R1F|1|V | 5' vRNA | Influenza B virus | Early transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106 | Electron microscopy | 2.58 | 2022-12-28 | |||
| 15 | 6QCS|1|V+ 6QCS|1|R | 3 end, 5 end | Influenza B virus | Influenza B polymerase pre-initiation complex | Electron microscopy | 3.1 | 2019-06-05 | |||
| 16 | 6T0V|1|V | 5' vRNA | Influenza A virus | Bat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase) | Electron microscopy | 3.02 | 2020-04-15 | |||
| 17 | 6QCT|1|V | 5 end | Influenza B virus | Influenza B polymerase elongation complex | Electron microscopy | 3.2 | 2019-06-05 | |||
| 18 | 7ZPL|1|U | 5' vRNA | Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)) | Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hook | Electron microscopy | 3.12 | 2022-12-28 | |||
| 19 | 7ZPL|1|V | 5' vRNA | Influenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9)) | Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hook | Electron microscopy | 3.12 | 2022-12-28 |
Release history
| Release | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6T0N|1|V+6T0N|1|R | Bat Influenza A polymerase pre-initiation complex | ELECTRON MICROSCOPY | 2.54 | 14 |
| 2 | 7R0E|1|V+7R0E|1|R+7R0E|1|M | Early transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 position | ELECTRON MICROSCOPY | 2.51 | 14 |
| 3 | 8BEK|1|V+8BEK|1|R+8BEK|1|M | Early transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 position | ELECTRON MICROSCOPY | 2.86 | 14 |
| 4 | 4WRT|1|V+4WRT|1|R | Crystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2) | X-RAY DIFFRACTION | 2.7 | 14 |
| 5 | 6QCS|1|V+6QCS|1|R | Influenza B polymerase pre-initiation complex | ELECTRON MICROSCOPY | 3.1 | 14 |
| 6 | 4WSA|1|V+4WSA|1|R | Crystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form) | X-RAY DIFFRACTION | 3.4 | 14 |
| 7 | 5M3J|1|V+5M3J|1|R | Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD | X-RAY DIFFRACTION | 3.5 | 14 |
| 8 | 5MSG|1|V+5MSG|1|R | Influenza B polymerase bound to vRNA promoter and capped RNA primer | X-RAY DIFFRACTION | 3.8 | 14 |
| 9 | 7Z43|1|VVV+7Z43|1|RRR | Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B | X-RAY DIFFRACTION | 3.123 | 14 |
| 10 | 6QCW|1|V+6QCW|1|R+6QCW|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer | X-RAY DIFFRACTION | 2.88 | 14 |
| 11 | 6QCX|1|V+6QCX|1|R+6QCX|1|M | Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer | X-RAY DIFFRACTION | 3.08 | 14 |
| 12 | 6QCV|1|V+6QCV|1|R+6QCV|1|M | Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP | X-RAY DIFFRACTION | 3.24 | 14 |
| 13 | 7QTL|1|V | Influenza A/H7N9 polymerase elongation complex | ELECTRON MICROSCOPY | 2.48 | 13 |
| 14 | 7ZPL|1|V | Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hook | ELECTRON MICROSCOPY | 3.12 | 12 |
| 15 | 7ZPL|1|U | Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hook | ELECTRON MICROSCOPY | 3.12 | 12 |
| 16 | 6SZV|1|V | Bat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only) | ELECTRON MICROSCOPY | 2.5 | 14 |
| 17 | 6T0V|1|V | Bat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase) | ELECTRON MICROSCOPY | 3.02 | 14 |
| 18 | 7R1F|1|V | Early transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106 | ELECTRON MICROSCOPY | 2.58 | 12 |
| 19 | 6QCT|1|V | Influenza B polymerase elongation complex | ELECTRON MICROSCOPY | 3.2 | 13 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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