BGSU RNA Site //

Equivalence class NR_4.0_14145.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14WRT|1|V+ 4WRT|1|R (rep)Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' endInfluenza B virusVirusesCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-ray diffraction2.72014-11-19
26QCW|1|V+ 6QCW|1|R+ 6QCW|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructSyntheticCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-ray diffraction2.882019-06-05
36QCX|1|V+ 6QCX|1|R+ 6QCX|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3')synthetic constructSyntheticCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-ray diffraction3.082019-06-05
47Z43|1|VVV+ 7Z43|1|RRRRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3')Influenza B virusVirusesInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-ray diffraction3.1232022-05-11
56QCV|1|V+ 6QCV|1|R+ 6QCV|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructSyntheticCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-ray diffraction3.242019-06-05
64WSA|1|V+ 4WSA|1|RInfluenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' endInfluenza B virusVirusesCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-ray diffraction3.42014-11-19
75M3J|1|V+ 5M3J|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3')Influenza B virusVirusesInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-ray diffraction3.52016-12-21
85MSG|1|V+ 5MSG|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3')Influenza B virusVirusesInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-ray diffraction3.82017-02-08
97R0E|1|V+ 7R0E|1|R+ 7R0E|1|M5' vRNA, 3' vRNA, mRNAInfluenza A virusVirusesEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionElectron microscopy2.512022-12-28
106T0N|1|V+ 6T0N|1|R5' vRNA, 3' vRNAInfluenza B virusVirusesBat Influenza A polymerase pre-initiation complexElectron microscopy2.542020-04-15
116SZV|1|V5' vRNAInfluenza B virusVirusesBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)Electron microscopy2.52020-04-15
128BEK|1|V+ 8BEK|1|R+ 8BEK|1|M5' vRNA, 3' vRNA, mRNAInfluenza A virusVirusesEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionElectron microscopy2.862022-12-28
137QTL|1|V5' vRNAInfluenza A virusVirusesInfluenza A/H7N9 polymerase elongation complexElectron microscopy2.482022-12-28
147R1F|1|V5' vRNAInfluenza B virusVirusesEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106Electron microscopy2.582022-12-28
156QCS|1|V+ 6QCS|1|R5 end, 3 endInfluenza B virusVirusesInfluenza B polymerase pre-initiation complexElectron microscopy3.12019-06-05
166T0V|1|V5' vRNAInfluenza A virusVirusesBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)Electron microscopy3.022020-04-15
176QCT|1|V5 endInfluenza B virusVirusesInfluenza B polymerase elongation complexElectron microscopy3.22019-06-05
187ZPL|1|U5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.122022-12-28
197ZPL|1|V5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.122022-12-28

Release history

Release3.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.279
Date2022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_14145.1NR_4.0_36180.13.263(1) 6SZV|1|V(18) 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0V|1|V, 6T0N|1|V+6T0N|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R(0)
NR_4.0_14145.1NR_4.0_45043.43.263(10) 6QCS|1|V+6QCS|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 4WRT|1|V+4WRT|1|R, 5MSG|1|V+5MSG|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 5M3J|1|V+5M3J|1|R, 7Z43|1|VVV+7Z43|1|RRR, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 4WSA|1|V+4WSA|1|R, 6T0N|1|V+6T0N|1|R(9) 6QCT|1|V, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7QTL|1|V, 7ZPL|1|V, 6T0V|1|V, 7ZPL|1|U, 6SZV|1|V(0)
NR_4.0_14145.1NR_4.0_56913.13.263(1) 6T0V|1|V(18) 6T0N|1|V+6T0N|1|R, 6SZV|1|V, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V(0)
NR_4.0_14145.1NR_4.0_57831.13.263(1) 6QCT|1|V(18) 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0V|1|V, 6T0N|1|V+6T0N|1|R, 6SZV|1|V, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCS|1|V+6QCS|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16T0N|1|V+6T0N|1|RBat Influenza A polymerase pre-initiation complexELECTRON MICROSCOPY2.5414
27R0E|1|V+7R0E|1|R+7R0E|1|MEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionELECTRON MICROSCOPY2.5114
38BEK|1|V+8BEK|1|R+8BEK|1|MEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionELECTRON MICROSCOPY2.8614
44WRT|1|V+4WRT|1|RCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-RAY DIFFRACTION2.714
56QCS|1|V+6QCS|1|RInfluenza B polymerase pre-initiation complexELECTRON MICROSCOPY3.114
64WSA|1|V+4WSA|1|RCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-RAY DIFFRACTION3.414
75M3J|1|V+5M3J|1|RInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-RAY DIFFRACTION3.514
85MSG|1|V+5MSG|1|RInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-RAY DIFFRACTION3.814
97Z43|1|VVV+7Z43|1|RRRInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-RAY DIFFRACTION3.12314
106QCW|1|V+6QCW|1|R+6QCW|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-RAY DIFFRACTION2.8814
116QCX|1|V+6QCX|1|R+6QCX|1|MCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-RAY DIFFRACTION3.0814
126QCV|1|V+6QCV|1|R+6QCV|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-RAY DIFFRACTION3.2414
137QTL|1|VInfluenza A/H7N9 polymerase elongation complexELECTRON MICROSCOPY2.4813
147ZPL|1|VSymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
157ZPL|1|USymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
166SZV|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)ELECTRON MICROSCOPY2.514
176T0V|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)ELECTRON MICROSCOPY3.0214
187R1F|1|VEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106ELECTRON MICROSCOPY2.5812
196QCT|1|VInfluenza B polymerase elongation complexELECTRON MICROSCOPY3.213
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