Equivalence class NR_4.0_16232.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5L00|1|A+ 5L00|1|B (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 2 | 5L00|1|C+ 5L00|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 3 | 5KRG|1|C+ 5KRG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | ||
| 4 | 5KRG|1|A+ 5KRG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | ||
| 5 | 7U87|1|A+ 7U87|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3') | synthetic construct | Synthetic | Product of 13mer primer with activated G monomer diastereomer 1 | X-ray diffraction | 1.701 | 2023-03-15 | ||
| 6 | 6U6J|1|A+ 6U6J|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(DPG))-3') | synthetic construct | Synthetic | RNA-monomer complex containing pyrophosphate linkage | X-ray diffraction | 1.6 | 2019-11-20 | ||
| 7 | 6C8O|1|A+ 6C8O|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer, 3h soaking | X-ray diffraction | 1.85 | 2018-05-30 | ||
| 8 | 5V0H|1|A+ 5V0H|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA duplex with 2-MeImpG analogue bound-one binding site | X-ray diffraction | 1.9 | 2017-03-08 | ||
| 9 | 7U89|1|A+ 7U89|1|B | RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3') | synthetic construct | Synthetic | Product of 14mer primer with activated G monomer diastereomer 1 | X-ray diffraction | 1.65 | 2023-03-15 | ||
| 10 | 6C8N|1|A+ 6C8N|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer complex, 2h soaking | X-ray diffraction | 1.9 | 2018-05-30 | ||
| 11 | 7U8A|1|A+ 7U8A|1|B | RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*(G46))-3') | synthetic construct | Synthetic | Product of 14mer primer with activated G monomer diastereomer 2 | X-ray diffraction | 2.1 | 2023-03-15 | ||
| 12 | 6C8M|1|A+ 6C8M|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3'), RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer, 1.5h soaking | X-ray diffraction | 2.4 | 2018-05-30 | ||
| 13 | 7U88|1|A+ 7U88|1|B | RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(G46)P*(G46))-3') | synthetic construct | Synthetic | Product of 13mer primer with activated G monomer diastereomer 2 | X-ray diffraction | 2.14 | 2023-03-15 |
Release history
| Release | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_16232.3 | NR_4.0_16232.2 | 3.274 | (9) 5KRG|1|C+5KRG|1|D, 5KRG|1|A+5KRG|1|B, 6U6J|1|A+6U6J|1|B, 6C8O|1|A+6C8O|1|B, 6C8N|1|A+6C8N|1|B, 6C8M|1|A+6C8M|1|B, 5V0H|1|A+5V0H|1|B, 5L00|1|C+5L00|1|D, 5L00|1|A+5L00|1|B | (4) 7U89|1|A+7U89|1|B, 7U88|1|A+7U88|1|B, 7U87|1|A+7U87|1|B, 7U8A|1|A+7U8A|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5KRG|1|A+5KRG|1|B | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 |
| 2 | 5KRG|1|C+5KRG|1|D | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 |
| 3 | 6U6J|1|A+6U6J|1|B | RNA-monomer complex containing pyrophosphate linkage | X-RAY DIFFRACTION | 1.6 | 10 |
| 4 | 5L00|1|A+5L00|1|B | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 |
| 5 | 5L00|1|C+5L00|1|D | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 |
| 6 | 7U89|1|A+7U89|1|B | Product of 14mer primer with activated G monomer diastereomer 1 | X-RAY DIFFRACTION | 1.65 | 10 |
| 7 | 7U88|1|A+7U88|1|B | Product of 13mer primer with activated G monomer diastereomer 2 | X-RAY DIFFRACTION | 2.14 | 9 |
| 8 | 5V0H|1|A+5V0H|1|B | RNA duplex with 2-MeImpG analogue bound-one binding site | X-RAY DIFFRACTION | 1.9 | 11 |
| 9 | 7U87|1|A+7U87|1|B | Product of 13mer primer with activated G monomer diastereomer 1 | X-RAY DIFFRACTION | 1.701 | 9 |
| 10 | 7U8A|1|A+7U8A|1|B | Product of 14mer primer with activated G monomer diastereomer 2 | X-RAY DIFFRACTION | 2.1 | 10 |
| 11 | 6C8O|1|A+6C8O|1|B | RNA-activated 2-AIpG monomer, 3h soaking | X-RAY DIFFRACTION | 1.85 | 11 |
| 12 | 6C8N|1|A+6C8N|1|B | RNA-activated 2-AIpG monomer complex, 2h soaking | X-RAY DIFFRACTION | 1.9 | 11 |
| 13 | 6C8M|1|A+6C8M|1|B | RNA-activated 2-AIpG monomer, 1.5h soaking | X-RAY DIFFRACTION | 2.4 | 11 |