BGSU RNA Site //

Equivalence class NR_4.0_17351.3 Current

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17QVP|1|B4 (rep)Transfer RNAtRNA P/P, mRNAHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
26Y2L|1|B4Transfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome in POST stateElectron microscopy32020-04-15
36OLE|1|uTransfer RNAAP RNA, mRNAHomo sapiensEukaryaRF00005Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
46OM0|1|uTransfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
57QVP|1|D5Transfer RNAtRNA P/PHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
66Y0G|1|D4Transfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome in classical-PRE stateElectron microscopy3.22020-04-15
76Y0G|1|B4Transfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome in classical-PRE stateElectron microscopy3.22020-04-15
86OLG|1|BvTransfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.42019-06-19
96OLI|1|uTransfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.52019-06-19
106Y57|1|D4Transfer RNAA/P tRNAHomo sapiensEukaryaRF00005Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
116OM7|1|uTransfer RNAP/E site tRNA, mRNAHomo sapiensEukaryaRF00005Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsElectron microscopy3.72019-06-19
126W6L|1|uTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of the human ribosome-TMCO1 transloconElectron microscopy3.842020-09-02
136OLZ|1|BvTransfer RNAtRNA, mRNAHomo sapiensEukaryaRF00005Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAElectron microscopy3.92019-06-19
146OLF|1|uTransfer RNAPE tRNA, mRNAHomo sapiensEukaryaRF00005Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsElectron microscopy3.92019-06-19

Release history

Release3.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.275
Date2022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_17351.3NR_4.0_17351.23.252(12) 6Y2L|1|B4, 6Y0G|1|D4, 6Y0G|1|B4, 6W6L|1|u, 6OM7|1|u, 6OM0|1|u, 6OLZ|1|Bv, 6OLI|1|u, 6OLG|1|Bv, 6OLF|1|u, 6OLE|1|u, 6Y57|1|D4(2) 7QVP|1|B4, 7QVP|1|D5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16Y0G|1|B4Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.276
26Y2L|1|B4Structure of human ribosome in POST stateELECTRON MICROSCOPY376
37QVP|1|B4Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY376
46OLG|1|BvHuman ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.476
56OLZ|1|BvHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.976
66Y0G|1|D4Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.276
76OM7|1|uHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.776
86OLF|1|uHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.976
96OLI|1|uStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.576
106OLE|1|uHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.176
116OM0|1|uHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.176
126W6L|1|uCryo-EM structure of the human ribosome-TMCO1 transloconELECTRON MICROSCOPY3.8475
137QVP|1|D5Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY373
146Y57|1|D4Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.573