Equivalence class NR_4.0_17351.3 Current
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 7QVP|1|B4 (rep) | Transfer RNA | tRNA P/P, mRNA | Homo sapiens | Eukarya | RF00005 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
2 | 6Y2L|1|B4 | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in POST state | Electron microscopy | 3 | 2020-04-15 |
3 | 6OLE|1|u | Transfer RNA | AP RNA, mRNA | Homo sapiens | Eukarya | RF00005 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
4 | 6OM0|1|u | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
5 | 7QVP|1|D5 | Transfer RNA | tRNA P/P | Homo sapiens | Eukarya | RF00005 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
6 | 6Y0G|1|D4 | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in classical-PRE state | Electron microscopy | 3.2 | 2020-04-15 |
7 | 6Y0G|1|B4 | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in classical-PRE state | Electron microscopy | 3.2 | 2020-04-15 |
8 | 6OLG|1|Bv | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 2019-06-19 |
9 | 6OLI|1|u | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 2019-06-19 |
10 | 6Y57|1|D4 | Transfer RNA | A/P tRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
11 | 6OM7|1|u | Transfer RNA | P/E site tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | Electron microscopy | 3.7 | 2019-06-19 |
12 | 6W6L|1|u | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of the human ribosome-TMCO1 translocon | Electron microscopy | 3.84 | 2020-09-02 |
13 | 6OLZ|1|Bv | Transfer RNA | tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | Electron microscopy | 3.9 | 2019-06-19 |
14 | 6OLF|1|u | Transfer RNA | PE tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | Electron microscopy | 3.9 | 2019-06-19 |
Release history
Release | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 |
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Date | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 |
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 6Y0G|1|B4 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 76 |
2 | 6Y2L|1|B4 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 76 |
3 | 7QVP|1|B4 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 76 |
4 | 6OLG|1|Bv | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 76 |
5 | 6OLZ|1|Bv | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 76 |
6 | 6Y0G|1|D4 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 76 |
7 | 6OM7|1|u | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 76 |
8 | 6OLF|1|u | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 76 |
9 | 6OLI|1|u | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 76 |
10 | 6OLE|1|u | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 76 |
11 | 6OM0|1|u | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 76 |
12 | 6W6L|1|u | Cryo-EM structure of the human ribosome-TMCO1 translocon | ELECTRON MICROSCOPY | 3.84 | 75 |
13 | 7QVP|1|D5 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 73 |
14 | 6Y57|1|D4 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 73 |