RNA 3D Hub //

Equivalence class NR_4.0_17996.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14J7L|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-ray diffraction1.82013-03-27
25W0M|1|JU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
35BUD|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.992015-07-08
45W0M|1|IU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
55W0M|1|HU5 single-stranded RNAsynthetic constructStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
64J7M|1|BRNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3')synthetic constructCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-ray diffraction1.72013-03-27
75BUD|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.992015-07-08
86A4E|1|BRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.452019-03-13
96A4E|1|DRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.452019-03-13
106HXX|1|AaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
116HXX|1|AbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
126HXX|1|AcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
136HXX|1|AdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
146HXX|1|AeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
156HXX|1|AfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
166HXX|1|AgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
176HXX|1|AhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
186HXX|1|AiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
196HXX|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
206HXX|1|AkRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
216HXX|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
226HXX|1|AmRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
236HXX|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
246HXX|1|AoRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
256HXX|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
266HXX|1|AqRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
276HXX|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
286HXX|1|AsRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
296HXX|1|AtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
306HXX|1|AuRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
316HXX|1|AvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
326HXX|1|AwRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
336HXX|1|AxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
346HXX|1|AyRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
356HXX|1|AzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
366HXX|1|BaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
376HXX|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
386HXX|1|BcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
396HXX|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
406HXX|1|BeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
416HXX|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
426HXX|1|BgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
436HXX|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
446HXX|1|BiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YPotato virus YElectron microscopy3.42019-08-07
455FN1|1|B5'-R(*UP*UP*UP*UP*UP)-3'Pepino mosaic virusElectron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)Electron microscopy3.92015-12-30
465ODV|1|aRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
475ODV|1|bRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
485ODV|1|cRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
495ODV|1|dRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
505ODV|1|eRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
515ODV|1|fRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
525ODV|1|gRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
535ODV|1|hRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
545ODV|1|iRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
555ODV|1|jRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
565ODV|1|kRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
575ODV|1|lRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
585ODV|1|mRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
595ODV|1|nRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
605ODV|1|oRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
615ODV|1|pRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
625ODV|1|qRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
635ODV|1|rRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
645ODV|1|sRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
655ODV|1|tRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
665ODV|1|uRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
675ODV|1|vRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
685ODV|1|wRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
695ODV|1|xRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27

Release history

Release3.863.873.883.893.903.913.923.933.943.953.963.973.983.99
Date2019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_17996.1NR_4.0_29090.13.86(34) 5ODV|1|j, 5ODV|1|r, 5W0M|1|H, 5BUD|1|D, 5ODV|1|f, 5ODV|1|m, 5ODV|1|t, 6A4E|1|B, 5ODV|1|h, 5ODV|1|a, 5ODV|1|p, 5ODV|1|w, 4J7L|1|B, 5ODV|1|d, 5ODV|1|k, 5W0M|1|I, 5BUD|1|E, 5ODV|1|n, 5ODV|1|u, 6A4E|1|D, 5ODV|1|i, 5ODV|1|b, 5ODV|1|q, 5ODV|1|x, 4J7M|1|B, 5ODV|1|e, 5ODV|1|l, 5ODV|1|s, 5W0M|1|J, 5FN1|1|B, 5ODV|1|g, 5ODV|1|o, 5ODV|1|v, 5ODV|1|c(35) 6HXX|1|Ay, 6HXX|1|Ac, 6HXX|1|Ar, 6HXX|1|Aw, 6HXX|1|Ap, 6HXX|1|Be, 6HXX|1|Ai, 6HXX|1|Bc, 6HXX|1|Av, 6HXX|1|Ag, 6HXX|1|Bi, 6HXX|1|Ao, 6HXX|1|At, 6HXX|1|Am, 6HXX|1|Bb, 6HXX|1|Af, 6HXX|1|Az, 6HXX|1|As, 6HXX|1|Ad, 6HXX|1|Bf, 6HXX|1|Al, 6HXX|1|Aq, 6HXX|1|Aj, 6HXX|1|Ax, 6HXX|1|Ab, 6HXX|1|Bd, 6HXX|1|Ah, 6HXX|1|Au, 6HXX|1|Bh, 6HXX|1|An, 6HXX|1|Ba, 6HXX|1|Ae, 6HXX|1|Ak, 6HXX|1|Aa, 6HXX|1|Bg(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_17996.1NR_4.0_17996.23.100(69) 6HXX|1|Bi, 6HXX|1|Aq, 6HXX|1|Ap, 6HXX|1|Ao, 6HXX|1|An, 6HXX|1|Am, 6HXX|1|Al, 6HXX|1|Ak, 6HXX|1|Aj, 6HXX|1|Ai, 6HXX|1|Ah, 6HXX|1|Ag, 6HXX|1|Af, 6HXX|1|Ae, 6HXX|1|Ad, 6HXX|1|Ac, 6HXX|1|Ar, 6HXX|1|As, 6HXX|1|Bh, 6HXX|1|Bg, 6HXX|1|Bf, 6HXX|1|Be, 6HXX|1|Bd, 6HXX|1|Bc, 6HXX|1|Bb, 6HXX|1|Ba, 6HXX|1|Az, 6HXX|1|Ay, 6HXX|1|Ax, 6HXX|1|Aw, 6HXX|1|Av, 6HXX|1|Au, 6HXX|1|At, 6HXX|1|Ab, 6HXX|1|Aa, 6A4E|1|D, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g, 5ODV|1|f, 5ODV|1|e, 5ODV|1|d, 5ODV|1|c, 5ODV|1|b, 5ODV|1|a, 5FN1|1|B, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 5ODV|1|l, 5ODV|1|m, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v, 5ODV|1|u, 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 4J7L|1|B(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14J7M|1|BCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-RAY DIFFRACTION1.73
24J7L|1|BCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-RAY DIFFRACTION1.85
35BUD|1|DCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.994
45BUD|1|ECrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.995
55ODV|1|fStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
65ODV|1|xStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
75ODV|1|nStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
85ODV|1|vStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
95ODV|1|tStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
105ODV|1|uStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
115ODV|1|qStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
125ODV|1|lStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
135ODV|1|hStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
145ODV|1|oStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
155ODV|1|pStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
165ODV|1|jStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
175ODV|1|bStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
185ODV|1|iStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
195ODV|1|rStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
205ODV|1|aStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
215ODV|1|cStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
225ODV|1|dStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
235ODV|1|kStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
245ODV|1|eStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
255ODV|1|gStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
265ODV|1|sStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
275ODV|1|wStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
285ODV|1|mStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
296HXX|1|AyPotato virus YELECTRON MICROSCOPY3.45
306HXX|1|BhPotato virus YELECTRON MICROSCOPY3.45
316HXX|1|AjPotato virus YELECTRON MICROSCOPY3.45
326HXX|1|AiPotato virus YELECTRON MICROSCOPY3.45
336HXX|1|BcPotato virus YELECTRON MICROSCOPY3.45
346HXX|1|AmPotato virus YELECTRON MICROSCOPY3.45
356HXX|1|AhPotato virus YELECTRON MICROSCOPY3.45
366HXX|1|BbPotato virus YELECTRON MICROSCOPY3.45
376HXX|1|ArPotato virus YELECTRON MICROSCOPY3.45
386HXX|1|BiPotato virus YELECTRON MICROSCOPY3.45
396HXX|1|AwPotato virus YELECTRON MICROSCOPY3.45
406HXX|1|BePotato virus YELECTRON MICROSCOPY3.45
416HXX|1|AcPotato virus YELECTRON MICROSCOPY3.45
426HXX|1|AaPotato virus YELECTRON MICROSCOPY3.45
436HXX|1|AoPotato virus YELECTRON MICROSCOPY3.45
446HXX|1|AePotato virus YELECTRON MICROSCOPY3.45
456HXX|1|BaPotato virus YELECTRON MICROSCOPY3.45
466HXX|1|BgPotato virus YELECTRON MICROSCOPY3.45
476HXX|1|BdPotato virus YELECTRON MICROSCOPY3.45
486HXX|1|AnPotato virus YELECTRON MICROSCOPY3.45
496HXX|1|AxPotato virus YELECTRON MICROSCOPY3.45
506HXX|1|AqPotato virus YELECTRON MICROSCOPY3.45
516HXX|1|AvPotato virus YELECTRON MICROSCOPY3.45
526HXX|1|AuPotato virus YELECTRON MICROSCOPY3.45
536HXX|1|AkPotato virus YELECTRON MICROSCOPY3.45
546HXX|1|AlPotato virus YELECTRON MICROSCOPY3.45
556HXX|1|AtPotato virus YELECTRON MICROSCOPY3.45
566HXX|1|AbPotato virus YELECTRON MICROSCOPY3.45
576HXX|1|AfPotato virus YELECTRON MICROSCOPY3.45
586HXX|1|AsPotato virus YELECTRON MICROSCOPY3.45
596HXX|1|AdPotato virus YELECTRON MICROSCOPY3.45
606HXX|1|AzPotato virus YELECTRON MICROSCOPY3.45
616HXX|1|ApPotato virus YELECTRON MICROSCOPY3.45
626HXX|1|AgPotato virus YELECTRON MICROSCOPY3.45
636HXX|1|BfPotato virus YELECTRON MICROSCOPY3.45
645W0M|1|JStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
655W0M|1|IStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
665W0M|1|HStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
675FN1|1|BElectron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)ELECTRON MICROSCOPY3.95
686A4E|1|BTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
696A4E|1|DTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
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