NR_4.0_18586.21

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5TBW\|1\|AS (rep)	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
2	5TBW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
3	4V88\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
4	4V88\|1\|A7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
5	5I4L\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
6	5MEI\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
7	5MEI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
8	5OBM\|1\|7	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
9	5LYB\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
10	5ON6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
11	5I4L\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
12	5ON6\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
13	5LYB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
14	5OBM\|1\|3	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
15	5NDW\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
16	5NDW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
17	5NDV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
18	5NDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
19	5NDG\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
20	5NDG\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
21	5TGM\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
22	5TGM\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
23	4V7R\|1\|B2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
24	4V7R\|1\|D2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
25	5DAT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
26	5DGV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
27	5DGF\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
28	5DAT\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
29	5DGE\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
30	5DGV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
31	5TGA\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
32	5DC3\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
33	5DGE\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
34	5DC3\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
35	5TGA\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
36	5DGF\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
37	4U4R\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
38	4U3U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
39	4U4R\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
40	4U3U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
41	4U4Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
42	4U4Q\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
43	4U3M\|1\|7	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
44	4U52\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
45	4U3M\|1\|3	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
46	4U4U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
47	4U6F\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
48	4U52\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
49	4U4U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
50	4U4N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
51	4U6F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
52	3JCT\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	2016-06-01
53	4U3N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
54	4U4Z\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
55	4U4N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
56	4U4Z\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
57	4U55\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
58	4U50\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
59	5T62\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	Electron microscopy	3.1	2017-02-08
60	5M1J\|1\|34	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
61	4U50\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
62	4U3N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
63	4U4Y\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
64	4U4Y\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
65	4U51\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
66	4U55\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
67	5H4P\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	Electron microscopy	3.07	2017-01-25
68	4U53\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
69	5APO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	2015-12-16
70	4U51\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
71	4U53\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
72	5JUP\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
73	4U56\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
74	4U56\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
75	5MC6\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	2017-01-18
76	5JUT\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	2016-10-05
77	6FT6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	Electron microscopy	3.9	2018-03-28
78	5JUO\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	2016-10-05
79	5JUU\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	2016-10-05
80	5APN\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	Electron microscopy	3.91	2015-12-16
81	4U4O\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
82	4U4O\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
83	5GAK\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	Electron microscopy	3.88	2016-02-24

Release history

Release	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29
Date	2018-03-29	2018-04-06	2018-04-13	2018-04-20	2018-04-27	2018-05-04	2018-05-11	2018-05-18	2018-05-25	2018-06-01	2018-06-08	2018-06-15	2018-06-22	2018-06-29	2018-07-06

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_18586.21	NR_4.0_18586.20	3.15	(82) 5OBM\|1\|7, 4U4N\|1\|7, 5APO\|1\|7, 5OBM\|1\|3, 4U4N\|1\|3, 5APN\|1\|7, 5NDW\|1\|7, 4U3U\|1\|7, 4V88\|1\|A7, 5NDW\|1\|3, 4U3U\|1\|3, 4V88\|1\|A3, 5NDV\|1\|7, 4U3N\|1\|7, 4V7R\|1\|D2, 5NDV\|1\|3, 4U3N\|1\|3, 4V7R\|1\|B2, 5NDG\|1\|7, 4U3M\|1\|7, 4U6F\|1\|7, 5NDG\|1\|3, 4U3M\|1\|3, 4U6F\|1\|3, 5MEI\|1\|AS, 3JCT\|1\|3, 4U56\|1\|7, 5MEI\|1\|3, 4U56\|1\|3, 5MC6\|1\|BR, 4U55\|1\|7, 5M1J\|1\|34, 4U55\|1\|3, 5LYB\|1\|7, 4U53\|1\|7, 5LYB\|1\|3, 4U53\|1\|3, 5JUU\|1\|D, 4U52\|1\|7, 5JUT\|1\|D, 4U52\|1\|3, 5JUP\|1\|D, 4U51\|1\|7, 5JUO\|1\|D, 4U51\|1\|3, 5I4L\|1\|7, 4U50\|1\|7, 5I4L\|1\|3, 4U50\|1\|3, 5H4P\|1\|3, 4U4Z\|1\|7, 5GAK\|1\|3, 4U4Z\|1\|3, 5DGV\|1\|7, 4U4Y\|1\|7, 5DGV\|1\|3, 5TGM\|1\|7, 4U4Y\|1\|3, 5DGF\|1\|7, 5TGM\|1\|3, 4U4U\|1\|7, 5DGF\|1\|3, 5TGA\|1\|7, 4U4U\|1\|3, 5DGE\|1\|7, 5TGA\|1\|3, 4U4R\|1\|7, 5DGE\|1\|3, 5TBW\|1\|AS, 4U4R\|1\|3, 5DC3\|1\|7, 5TBW\|1\|3, 4U4Q\|1\|7, 5T62\|1\|B, 4U4Q\|1\|3, 5DC3\|1\|3, 5ON6\|1\|AS, 4U4O\|1\|7, 5DAT\|1\|7, 5ON6\|1\|3, 4U4O\|1\|3, 5DAT\|1\|3	(1) 6FT6\|1\|3	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_18586.21	NR_4.0_18586.22	3.30	(83) 5DC3\|1\|7, 4U3N\|1\|7, 5H4P\|1\|3, 4U4Q\|1\|7, 5LYB\|1\|7, 4U4Z\|1\|7, 5NDV\|1\|7, 4U53\|1\|7, 5TBW\|1\|3, 4V7R\|1\|D2, 5DC3\|1\|3, 4U3N\|1\|3, 5GAK\|1\|3, 4U4Q\|1\|3, 5LYB\|1\|3, 4U4Z\|1\|3, 5NDV\|1\|3, 4U53\|1\|3, 5T62\|1\|B, 4V7R\|1\|B2, 4U3M\|1\|7, 5DGV\|1\|7, 4U4O\|1\|7, 5JUU\|1\|D, 4U4Y\|1\|7, 5NDG\|1\|7, 4U52\|1\|7, 5ON6\|1\|AS, 4U6F\|1\|7, 6FT6\|1\|3, 5DAT\|1\|7, 4U3M\|1\|3, 5DGV\|1\|3, 4U4O\|1\|3, 5JUT\|1\|D, 4U4Y\|1\|3, 5NDG\|1\|3, 4U52\|1\|3, 5ON6\|1\|3, 4U6F\|1\|3, 5TGM\|1\|7, 5DAT\|1\|3, 3JCT\|1\|3, 5DGF\|1\|7, 4U4N\|1\|7, 5JUP\|1\|D, 4U4U\|1\|7, 5MEI\|1\|AS, 4U51\|1\|7, 5OBM\|1\|7, 4U56\|1\|7, 5TGM\|1\|3, 5APO\|1\|7, 5DGF\|1\|3, 4U4N\|1\|3, 5JUO\|1\|D, 4U4U\|1\|3, 5MEI\|1\|3, 4U51\|1\|3, 5OBM\|1\|3, 4U56\|1\|3, 5TGA\|1\|7, 5APN\|1\|7, 5DGE\|1\|7, 4U3U\|1\|7, 5I4L\|1\|7, 4U4R\|1\|7, 5MC6\|1\|BR, 4U50\|1\|7, 5NDW\|1\|7, 4U55\|1\|7, 5TGA\|1\|3, 4V88\|1\|A7, 5DGE\|1\|3, 4U3U\|1\|3, 5I4L\|1\|3, 4U4R\|1\|3, 5M1J\|1\|34, 4U50\|1\|3, 5NDW\|1\|3, 4U55\|1\|3, 5TBW\|1\|AS, 4V88\|1\|A3	(0)	(2) 6GQV\|1\|3, 6GQB\|1\|3

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5JUO\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
2	5JUT\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
3	5JUU\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
4	5JUP\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	121
5	5GAK\|1\|3	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	ELECTRON MICROSCOPY	3.88	121
6	5MC6\|1\|BR	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	121
7	4U4O\|1\|7	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
8	5TGM\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
9	4U52\|1\|7	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
10	5DAT\|1\|7	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
11	5DGF\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
12	4U6F\|1\|7	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
13	5DGV\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
14	5DGE\|1\|7	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
15	5DC3\|1\|7	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
16	4U56\|1\|7	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
17	4U50\|1\|7	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
18	4U51\|1\|7	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
19	4U53\|1\|7	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
20	4U4U\|1\|7	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
21	4U4Q\|1\|7	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
22	4U4N\|1\|7	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
23	4U4Z\|1\|7	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
24	4U55\|1\|7	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
25	4U3N\|1\|7	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
26	4U3U\|1\|7	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
27	4U4R\|1\|7	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
28	4U3M\|1\|7	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
29	4U4Y\|1\|7	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
30	4V88\|1\|A7	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
31	5I4L\|1\|7	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
32	5LYB\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
33	5TGA\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
34	5MEI\|1\|AS	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
35	5ON6\|1\|AS	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
36	5TBW\|1\|AS	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
37	5APO\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	121
38	5APN\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	ELECTRON MICROSCOPY	3.91	121
39	5NDG\|1\|7	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
40	5NDW\|1\|7	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
41	5NDV\|1\|7	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
42	5NDV\|1\|3	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
43	5NDG\|1\|3	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
44	5NDW\|1\|3	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
45	4U56\|1\|3	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
46	5MEI\|1\|3	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
47	5ON6\|1\|3	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
48	4U51\|1\|3	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
49	4U55\|1\|3	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
50	4U4Z\|1\|3	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
51	4U4N\|1\|3	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
52	4U4Q\|1\|3	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
53	4U4U\|1\|3	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
54	4U3M\|1\|3	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
55	5TBW\|1\|3	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
56	4V88\|1\|A3	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
57	4U4R\|1\|3	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
58	4U3U\|1\|3	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
59	4U4Y\|1\|3	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
60	4U3N\|1\|3	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
61	4U6F\|1\|3	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
62	4U52\|1\|3	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
63	4U50\|1\|3	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
64	4U53\|1\|3	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
65	5I4L\|1\|3	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
66	5TGA\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
67	5LYB\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
68	5DGV\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
69	5DAT\|1\|3	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
70	5DC3\|1\|3	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
71	5DGE\|1\|3	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
72	5DGF\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
73	5TGM\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
74	4U4O\|1\|3	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
75	3JCT\|1\|3	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	121
76	5H4P\|1\|3	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	ELECTRON MICROSCOPY	3.07	121
77	5M1J\|1\|34	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	121
78	5OBM\|1\|7	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
79	5OBM\|1\|3	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
80	5T62\|1\|B	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	ELECTRON MICROSCOPY	3.1	121
81	6FT6\|1\|3	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	ELECTRON MICROSCOPY	3.9	121
82	4V7R\|1\|B2	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121
83	4V7R\|1\|D2	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121

Equivalence class NR_4.0_18586.21 Obsolete

Release history

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