Equivalence class NR_4.0_19951.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2ZM5|1|C (rep) | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
| 2 | 2ZXU|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
| 3 | 3FOZ|1|C | tRNA(Phe) | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 | ||||
| 4 | 3L0U|1|A | Transfer RNA | Unmodified tRNAPhe | Escherichia coli | Bacteria | RF00005 | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-ray diffraction | 3 | 2010-03-16 |
| 5 | 4V5E|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 6 | 4V9D|1|BV | Transfer RNA | messenger RNA, phenylalanine specific transfer RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 7 | 3FOZ|1|D | tRNA(Phe) | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 | ||||
| 8 | 4V5D|1|AV | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 9 | 4V5D|1|CV | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 10 | 4V9C|1|AV | Transfer RNA | Messenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
| 11 | 4V5Q|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 12 | 4V5S|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 13 | 4V5L|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
| 14 | 4V5P|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 15 | 4V5P|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 16 | 2ZM5|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
| 17 | 4V6F|1|CC | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 18 | 4V5J|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 19 | 4W2F|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 20 | 4V5R|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 21 | 4V5E|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 22 | 4V5R|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 23 | 4V5Q|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 24 | 2ZXU|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
| 25 | 4V6F|1|BC | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 26 | 4V5S|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 27 | 4W2E|1|w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
| 28 | 4V9H|1|AV | Transfer RNA | mRNA, PE hybrid state tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-ray diffraction | 2.86 | 2014-07-09 |
| 29 | 1VY5|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 30 | 4WQU|1|BW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 31 | 4WQF|1|BW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 32 | 4WQU|1|DW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 33 | 4WQF|1|DW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 34 | 4V5J|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 35 | 4W2I|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 36 | 1VY4|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 37 | 4W2E|1|x | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
| 38 | 4P6F|1|XW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
| 39 | 4W2G|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 40 | 1VY5|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 41 | 4WPO|1|DW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 42 | 4V6F|1|CB | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 43 | 1VY4|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 44 | 4V9D|1|AV | Transfer RNA | messenger RNA, phenylalanine specific transfer RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 45 | 4W2G|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 46 | 4W2F|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 47 | 4WQU|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 48 | 4WPO|1|BY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 49 | 4WQF|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 50 | 4V4I|1|z | Transfer RNA | MRNA, P-site PHE-tRNA | Escherichia coli | Bacteria | RF00005 | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-ray diffraction | 3.71 | 2014-07-09 |
| 51 | 1VY4|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 52 | 4W2G|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 53 | 4V6F|1|BB | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 54 | 4V6F|1|BD | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 55 | 4V6F|1|CD | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 56 | 4W2F|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 57 | 1VY4|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 58 | 4W2G|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 59 | 4V5G|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 60 | 4V51|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 61 | 4V5G|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 62 | 1VY5|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 63 | 4W2I|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 64 | 4W2I|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 65 | 4V9I|1|AW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 66 | 4V5D|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 67 | 4V5C|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 68 | 4P6F|1|QW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
| 69 | 4WPO|1|BW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 70 | 4W2I|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 71 | 4WQU|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 72 | 4WPO|1|DY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 73 | 4WQF|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 74 | 4W2F|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 75 | 4V97|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
| 76 | 4V5D|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 77 | 4V51|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 78 | 1VY5|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 79 | 4V8J|1|AW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
| 80 | 4V5C|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 81 | 4V5Q|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 82 | 4V5E|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 83 | 4V5P|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 84 | 4V5R|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 85 | 4V8J|1|CW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
| 86 | 4V5P|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 87 | 4V97|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
| 88 | 4V9I|1|CW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 89 | 4V5D|1|AY | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 90 | 4V5J|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 91 | 4V5D|1|CY | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 92 | 4V5L|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
| 93 | 4V9C|1|CV | Transfer RNA | Messenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
| 94 | 4V5S|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 95 | 4V5R|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 96 | 4V5C|1|CY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 97 | 4V5G|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 98 | 4V5G|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 99 | 4V5J|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 100 | 4V5Q|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 101 | 4W2H|1|AY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 102 | 4V5E|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 103 | 4V5C|1|AY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 104 | 4V5S|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 105 | 1VY7|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 106 | 1VY7|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 107 | 4W2H|1|CY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3FOZ|1|D | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-RAY DIFFRACTION | 2.5 | 69 |
| 2 | 1VY7|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 5 |
| 3 | 1VY7|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 5 |
| 4 | 4W2H|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 18 |
| 5 | 4W2F|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 67 |
| 6 | 4W2G|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 67 |
| 7 | 4W2I|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 67 |
| 8 | 1VY5|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 67 |
| 9 | 1VY4|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 67 |
| 10 | 4W2E|1|x | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 67 |
| 11 | 4WQF|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 67 |
| 12 | 4WQU|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 67 |
| 13 | 4WPO|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 67 |
| 14 | 4W2F|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 66 |
| 15 | 4W2G|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 66 |
| 16 | 4W2I|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 66 |
| 17 | 1VY5|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 66 |
| 18 | 1VY4|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 66 |
| 19 | 4WQU|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 66 |
| 20 | 4WQF|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 66 |
| 21 | 4WPO|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 66 |
| 22 | 4P6F|1|XW | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 76 |
| 23 | 4V97|1|CW | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 76 |
| 24 | 4V8J|1|CW | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 76 |
| 25 | 4V5C|1|CW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 |
| 26 | 4P6F|1|QW | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 76 |
| 27 | 4V97|1|AW | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 76 |
| 28 | 4V8J|1|AW | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 76 |
| 29 | 4V5C|1|AW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 |
| 30 | 4V5D|1|CW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 76 |
| 31 | 4V5D|1|AW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 76 |
| 32 | 4V51|1|AW | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 |
| 33 | 4V51|1|CW | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 |
| 34 | 4V5E|1|CW | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
| 35 | 4V9I|1|AW | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 76 |
| 36 | 4V9I|1|CW | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 76 |
| 37 | 4V5E|1|AW | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
| 38 | 4V5J|1|AW | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
| 39 | 4V5J|1|CW | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
| 40 | 4V5L|1|AW | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 76 |
| 41 | 4V5Q|1|AW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 42 | 4V5S|1|AW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 43 | 4V5P|1|AW | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 44 | 4V5P|1|CW | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 45 | 4V5R|1|AW | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 46 | 4V5R|1|CW | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 47 | 4V5G|1|AW | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
| 48 | 4V5G|1|CW | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
| 49 | 4V5S|1|CW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 50 | 4V5Q|1|CW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 51 | 4V6F|1|CD | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
| 52 | 4V6F|1|BD | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
| 53 | 4V9H|1|AV | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-RAY DIFFRACTION | 2.86 | 74 |
| 54 | 4V9D|1|AV | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 |
| 55 | 4V5C|1|AY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 75 |
| 56 | 4V5C|1|CY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 75 |
| 57 | 4V5D|1|AY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
| 58 | 4V5D|1|CY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
| 59 | 4W2I|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 65 |
| 60 | 1VY5|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 64 |
| 61 | 4W2G|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 65 |
| 62 | 4W2F|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 65 |
| 63 | 1VY4|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 64 |
| 64 | 4WPO|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 64 |
| 65 | 4W2F|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 67 |
| 66 | 4W2G|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 67 |
| 67 | 4WPO|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 66 |
| 68 | 1VY4|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 66 |
| 69 | 1VY5|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 66 |
| 70 | 4W2I|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 67 |
| 71 | 4V6F|1|CB | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
| 72 | 4V6F|1|BB | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
| 73 | 4WQU|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 69 |
| 74 | 4WQF|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 69 |
| 75 | 4WQU|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 69 |
| 76 | 4WQF|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 69 |
| 77 | 4W2E|1|w | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 68 |
| 78 | 4V6F|1|BC | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
| 79 | 4V9D|1|BV | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 |
| 80 | 4V9C|1|AV | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 76 |
| 81 | 4V6F|1|CC | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
| 82 | 4V5Q|1|CV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 83 | 4V5S|1|AV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 84 | 4V5Q|1|AV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 85 | 4V5P|1|AV | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 86 | 4V5P|1|CV | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
| 87 | 4V5R|1|CV | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 88 | 4V5R|1|AV | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 89 | 4V5L|1|AV | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 76 |
| 90 | 4V5S|1|CV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
| 91 | 4V5J|1|AV | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
| 92 | 4V5E|1|AV | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
| 93 | 4V5E|1|CV | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
| 94 | 4V5J|1|CV | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
| 95 | 4V5D|1|AV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
| 96 | 4V5D|1|CV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
| 97 | 4V5G|1|AV | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
| 98 | 4V5G|1|CV | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
| 99 | 4V4I|1|z | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-RAY DIFFRACTION | 3.71 | 67 |
| 100 | 3L0U|1|A | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-RAY DIFFRACTION | 3 | 73 |
| 101 | 4V9C|1|CV | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 76 |
| 102 | 2ZM5|1|D | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-RAY DIFFRACTION | 2.55 | 69 |
| 103 | 2ZXU|1|D | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-RAY DIFFRACTION | 2.75 | 69 |
| 104 | 3FOZ|1|C | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-RAY DIFFRACTION | 2.5 | 74 |
| 105 | 2ZXU|1|C | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-RAY DIFFRACTION | 2.75 | 74 |
| 106 | 2ZM5|1|C | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-RAY DIFFRACTION | 2.55 | 74 |
| 107 | 4W2H|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 5 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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