Equivalence class NR_4.0_20829.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6EXN|1|2+ 6EXN|1|6 (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, Intron lariat: UBC4 RNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
| 2 | 5LJ3|1|Z+ 5LJ3|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
Release history
| Release | 3.9 |
|---|---|
| Date | 2018-02-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_20829.4 | NR_4.0_20829.3 | 3.9 | (1) 5LJ3|1|Z+5LJ3|1|V | (1) 6EXN|1|2+6EXN|1|6 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_20829.4 | NR_4.0_20829.5 | 3.10 | (2) 6EXN|1|2+6EXN|1|6, 5LJ3|1|Z+5LJ3|1|V | (0) | (1) 6BK8|1|2+6BK8|1|6+6BK8|1|i |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6EXN|1|2+6EXN|1|6 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 136 |
| 2 | 5LJ3|1|Z+5LJ3|1|V | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 171 |